Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6P70_RS10070 Genome accession   NZ_CP027388
Coordinates   1773222..1773851 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2011C-4251     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1762144..1785025 1773222..1773851 within 0


Gene organization within MGE regions


Location: 1762144..1785025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P70_RS10010 - 1762144..1763163 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  C6P70_RS10015 yccA 1763571..1764230 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  C6P70_RS10020 tusE 1764321..1764650 (+) 330 WP_000904444.1 sulfurtransferase TusE -
  C6P70_RS10025 yccX 1764647..1764925 (-) 279 WP_000048255.1 acylphosphatase -
  C6P70_RS10030 rlmI 1765020..1766210 (+) 1191 WP_000116292.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  C6P70_RS10035 hspQ 1766268..1766585 (+) 318 WP_001295356.1 heat shock protein HspQ -
  C6P70_RS10040 yccU 1766630..1767043 (-) 414 WP_000665217.1 CoA-binding protein -
  C6P70_RS10045 yccT 1767216..1767878 (+) 663 WP_000847791.1 DUF2057 family protein -
  C6P70_RS10050 mgsA 1767974..1768432 (+) 459 WP_000424181.1 methylglyoxal synthase -
  C6P70_RS10055 helD 1768464..1770518 (-) 2055 WP_000420533.1 DNA helicase IV -
  C6P70_RS10060 yccF 1770641..1771087 (+) 447 WP_001261231.1 YccF domain-containing protein -
  C6P70_RS10065 yccS 1771097..1773259 (+) 2163 WP_000875044.1 YccS family putative transporter -
  C6P70_RS10070 sxy/tfoX 1773222..1773851 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6P70_RS10075 sulA 1774070..1774579 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6P70_RS10085 ompA 1774936..1775976 (+) 1041 WP_000750416.1 porin OmpA -
  C6P70_RS10090 matP 1776052..1776504 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6P70_RS10095 ycbZ 1776690..1778450 (+) 1761 WP_000156526.1 Lon protease family protein -
  C6P70_RS10100 fabA 1778519..1779037 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  C6P70_RS10105 rmf 1779107..1779274 (-) 168 WP_000828648.1 ribosome modulation factor -
  C6P70_RS10110 pqiC 1779530..1780093 (-) 564 WP_000759100.1 membrane integrity-associated transporter subunit PqiC -
  C6P70_RS10115 pqiB 1780090..1781730 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  C6P70_RS10120 pqiA 1781735..1782988 (-) 1254 WP_000333173.1 membrane integrity-associated transporter subunit PqiA -
  C6P70_RS10125 uup 1783118..1785025 (-) 1908 WP_000053079.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276761 C6P70_RS10070 WP_000839153.1 1773222..1773851(-) (sxy/tfoX) [Escherichia coli strain 2011C-4251]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276761 C6P70_RS10070 WP_000839153.1 1773222..1773851(-) (sxy/tfoX) [Escherichia coli strain 2011C-4251]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment