Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PA34_RS24355 Genome accession   NZ_CP032552
Coordinates   5065030..5065524 (+) Length   164 a.a.
NCBI ID   WP_026383922.1    Uniprot ID   A0A2R3QFX4
Organism   Pseudomonas aeruginosa strain PA34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5060030..5070524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA34_RS24340 (PA34_024340) - 5060720..5061169 (+) 450 WP_042919405.1 TIGR03751 family conjugal transfer lipoprotein -
  PA34_RS24345 (PA34_024345) - 5061169..5064063 (+) 2895 WP_114249773.1 conjugative transfer ATPase -
  PA34_RS24350 (PA34_024350) - 5064079..5064843 (+) 765 WP_034027938.1 thioredoxin domain-containing protein -
  PA34_RS24355 (PA34_024355) radC 5065030..5065524 (+) 495 WP_026383922.1 DNA repair protein RadC Machinery gene
  PA34_RS24360 (PA34_024360) - 5065669..5066115 (+) 447 WP_114249774.1 TIGR03757 family integrating conjugative element protein -
  PA34_RS24365 (PA34_024365) - 5066112..5067059 (+) 948 WP_058137603.1 TIGR03756 family integrating conjugative element protein -
  PA34_RS24370 (PA34_024370) - 5067070..5068476 (+) 1407 WP_113934056.1 integrating conjugative element protein -
  PA34_RS24375 (PA34_024375) - 5068473..5068829 (+) 357 WP_058137601.1 hypothetical protein -
  PA34_RS24380 (PA34_024380) - 5068842..5070359 (+) 1518 WP_023112373.1 conjugal transfer protein TraG N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18175.99 Da        Isoelectric Point: 5.5553

>NTDB_id=276759 PA34_RS24355 WP_026383922.1 5065030..5065524(+) (radC) [Pseudomonas aeruginosa strain PA34]
MSVVINDSCLESLSDISVQNEDWIVQQAIVLLERRVFKAGPRLERPAAVRDYLRLKLVAEPNEIFVVVFMNSMHDVLAVE
PMFHGTINATSVYPRVVLQRALQLNAAAVIFAHQHPSGTTEPSNADRLLTEQLKTALALIDVRVLDHFVIGQGAPYSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=276759 PA34_RS24355 WP_026383922.1 5065030..5065524(+) (radC) [Pseudomonas aeruginosa strain PA34]
ATGTCTGTCGTCATCAATGACTCCTGCCTGGAGTCGCTTTCCGATATTTCTGTTCAGAACGAGGACTGGATCGTTCAGCA
AGCCATCGTGTTGCTGGAGCGACGGGTTTTCAAAGCAGGGCCACGTCTTGAACGGCCCGCTGCGGTCAGGGACTACCTTC
GCTTGAAGCTGGTCGCCGAGCCCAATGAGATATTCGTCGTCGTGTTCATGAACAGCATGCACGACGTGCTGGCCGTGGAG
CCGATGTTCCATGGAACGATCAATGCGACCTCGGTTTATCCGCGTGTCGTGCTGCAGCGAGCGTTGCAACTGAACGCCGC
TGCGGTCATCTTCGCCCATCAGCACCCCTCGGGCACCACCGAGCCATCCAATGCGGATCGCTTGCTGACAGAGCAGTTGA
AGACGGCCTTGGCGCTTATCGACGTGCGGGTACTCGACCATTTTGTGATTGGTCAGGGCGCACCGTACTCGTTCGCCGAG
TCTGGTCTTTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3QFX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

41.781

89.024

0.372