Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PA34_RS11740 Genome accession   NZ_CP032552
Coordinates   2426714..2427208 (-) Length   164 a.a.
NCBI ID   WP_024007868.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2421714..2432208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA34_RS11715 (PA34_011715) - 2421866..2423389 (-) 1524 WP_029885968.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  PA34_RS11720 (PA34_011720) - 2423405..2423761 (-) 357 WP_029885967.1 hypothetical protein -
  PA34_RS11725 (PA34_011725) - 2423758..2425152 (-) 1395 WP_029885966.1 integrating conjugative element protein -
  PA34_RS11730 (PA34_011730) - 2425162..2426109 (-) 948 WP_029885965.1 TIGR03756 family integrating conjugative element protein -
  PA34_RS11735 (PA34_011735) - 2426106..2426552 (-) 447 WP_029885964.1 TIGR03757 family integrating conjugative element protein -
  PA34_RS11740 (PA34_011740) radC 2426714..2427208 (-) 495 WP_024007868.1 DNA repair protein RadC Machinery gene
  PA34_RS11745 (PA34_011745) - 2427387..2428151 (-) 765 WP_029885963.1 DsbA family protein -
  PA34_RS11750 (PA34_011750) - 2428165..2431032 (-) 2868 WP_029885962.1 conjugative transfer ATPase -
  PA34_RS11755 (PA34_011755) - 2431032..2431472 (-) 441 WP_029885961.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17921.69 Da        Isoelectric Point: 5.9735

>NTDB_id=276733 PA34_RS11740 WP_024007868.1 2426714..2427208(-) (radC) [Pseudomonas aeruginosa strain PA34]
MSFAINDSCVESLSAVAAQHEDWIIQQAIVLLEKRIFKAGPCLSRPAAVRDYLRVKLVAEPNEIFAAVFLDSMHQVLAYE
PLFRGTINSTSVYPRVVVQRVLELNAAAVIFAHQHPSGISEPSSADRVLTQQLQAALALIDVRVLDHIIVGQGSPFSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=276733 PA34_RS11740 WP_024007868.1 2426714..2427208(-) (radC) [Pseudomonas aeruginosa strain PA34]
ATGTCTTTCGCCATCAATGACTCCTGTGTGGAGTCGCTTTCCGCCGTAGCTGCCCAACACGAAGACTGGATCATCCAGCA
GGCCATCGTGCTGCTGGAAAAACGGATCTTCAAAGCTGGACCATGCCTCAGCCGGCCGGCCGCCGTGCGGGACTATCTGC
GCGTGAAACTGGTCGCTGAACCCAACGAGATATTTGCCGCTGTGTTCCTGGATAGCATGCACCAGGTGCTGGCCTACGAG
CCATTGTTCAGGGGCACGATCAACTCGACTTCTGTTTATCCACGTGTCGTCGTACAGCGTGTGCTGGAGTTGAACGCCGC
CGCGGTGATCTTCGCGCACCAGCACCCCTCGGGCATCTCCGAGCCGTCGAGCGCGGATCGTGTGCTGACCCAGCAACTGC
AGGCCGCGCTGGCGCTCATCGATGTACGGGTACTGGATCACATCATCGTAGGCCAAGGTTCCCCGTTCTCCTTTGCGGAG
TCAGGCCTGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.836

89.024

0.39