Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6P66_RS01625 Genome accession   NZ_CP027373
Coordinates   269065..269694 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 05-3629     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 264065..274694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P66_RS01610 helD 264307..266361 (-) 2055 WP_000420536.1 DNA helicase IV -
  C6P66_RS01615 yccF 266484..266930 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6P66_RS01620 yccS 266940..269102 (+) 2163 WP_000875019.1 YccS family putative transporter -
  C6P66_RS01625 sxy/tfoX 269065..269694 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6P66_RS01630 sulA 269913..270422 (+) 510 WP_097447598.1 SOS-induced cell division inhibitor SulA -
  C6P66_RS01640 ompA 270779..271831 (+) 1053 WP_000750419.1 porin OmpA -
  C6P66_RS01645 matP 271906..272358 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C6P66_RS01650 ycbZ 272544..274304 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276692 C6P66_RS01625 WP_000839153.1 269065..269694(-) (sxy/tfoX) [Escherichia coli strain 05-3629]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276692 C6P66_RS01625 WP_000839153.1 269065..269694(-) (sxy/tfoX) [Escherichia coli strain 05-3629]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment