Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6P67_RS05015 Genome accession   NZ_CP027371
Coordinates   985865..986494 (+) Length   209 a.a.
NCBI ID   WP_106879088.1    Uniprot ID   -
Organism   Escherichia coli strain 2015C-3905     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 980865..991494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P67_RS04990 ycbZ 981255..983015 (-) 1761 WP_106879087.1 Lon protease family protein -
  C6P67_RS04995 matP 983201..983653 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C6P67_RS05000 ompA 983728..984780 (-) 1053 WP_000750419.1 porin OmpA -
  C6P67_RS05010 sulA 985137..985646 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6P67_RS05015 sxy/tfoX 985865..986494 (+) 630 WP_106879088.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6P67_RS05020 yccS 986457..988619 (-) 2163 WP_000875044.1 YccS family putative transporter -
  C6P67_RS05025 yccF 988629..989075 (-) 447 WP_001261231.1 YccF domain-containing protein -
  C6P67_RS05030 helD 989198..991252 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24102.98 Da        Isoelectric Point: 9.0428

>NTDB_id=276672 C6P67_RS05015 WP_106879088.1 985865..986494(+) (sxy/tfoX) [Escherichia coli strain 2015C-3905]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSCHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276672 C6P67_RS05015 WP_106879088.1 985865..986494(+) (sxy/tfoX) [Escherichia coli strain 2015C-3905]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTGTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment