Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6P65_RS05960 Genome accession   NZ_CP027366
Coordinates   1173109..1173738 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 89-3156     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1168109..1178738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P65_RS05935 ycbZ 1168510..1170270 (-) 1761 WP_000156526.1 Lon protease family protein -
  C6P65_RS05940 matP 1170456..1170908 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6P65_RS05945 ompA 1170984..1172024 (-) 1041 WP_000750416.1 porin OmpA -
  C6P65_RS05955 sulA 1172381..1172890 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6P65_RS05960 sxy/tfoX 1173109..1173738 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6P65_RS05965 yccS 1173701..1175863 (-) 2163 WP_000875044.1 YccS family putative transporter -
  C6P65_RS05970 yccF 1175873..1176319 (-) 447 WP_001261231.1 YccF domain-containing protein -
  C6P65_RS05975 helD 1176442..1178496 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276629 C6P65_RS05960 WP_000839153.1 1173109..1173738(+) (sxy/tfoX) [Escherichia coli strain 89-3156]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276629 C6P65_RS05960 WP_000839153.1 1173109..1173738(+) (sxy/tfoX) [Escherichia coli strain 89-3156]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment