Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   C6I29_RS12615 Genome accession   NZ_CP027365
Coordinates   2699055..2699936 (-) Length   293 a.a.
NCBI ID   WP_034669944.1    Uniprot ID   A0A062BS24
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2694055..2704936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS12595 miaB 2695486..2696943 (+) 1458 WP_005018411.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C6I29_RS12600 - 2696982..2698079 (+) 1098 WP_005018410.1 PhoH family protein -
  C6I29_RS12605 ybeY 2698088..2698567 (+) 480 WP_034669946.1 rRNA maturation RNase YbeY -
  C6I29_RS12610 - 2698665..2699039 (+) 375 WP_372410826.1 hypothetical protein -
  C6I29_RS12615 tonB2 2699055..2699936 (-) 882 WP_034669944.1 energy transducer TonB Machinery gene
  C6I29_RS12620 - 2700180..2700860 (+) 681 WP_034669943.1 hypothetical protein -
  C6I29_RS12625 - 2701028..2701741 (+) 714 WP_034669942.1 DUF3108 domain-containing protein -
  C6I29_RS12630 - 2701834..2702409 (+) 576 WP_034669941.1 xanthine phosphoribosyltransferase -
  C6I29_RS12635 wrbA 2702448..2703041 (-) 594 WP_005018403.1 NAD(P)H:quinone oxidoreductase -
  C6I29_RS12640 - 2703154..2704398 (+) 1245 WP_005024473.1 YhjD/YihY/BrkB family envelope integrity protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32900.43 Da        Isoelectric Point: 7.4651

>NTDB_id=276615 C6I29_RS12615 WP_034669944.1 2699055..2699936(-) (tonB2) [Acinetobacter radioresistens strain DSSKY-A-001]
MLKKIISPGGTGLAWWQDPIFMGALLLAVILHSAILTLHFAMPDPEAAASKEIAVSIRPSSEQVKDADYLAQADQQGSGR
FREAHRISSQLPASSQQQSAGEQQQETLQQMHQQPQIQFEDKVLMTIMSWRKEAEQNQRKKALEELQSQFQAKAAMAASL
EAQYLQRQQDFSRQQRIKTVDGIQAKQDAAAAYLDKFREKVELYGNRYYPQQAKAERLTGEVQLMVILNAQGGIRAIRLL
ESSGHTILDEAAKASVRKGAPFGLFDAGMKDISELRIVRTWRFDPAEAEFEVK

Nucleotide


Download         Length: 882 bp        

>NTDB_id=276615 C6I29_RS12615 WP_034669944.1 2699055..2699936(-) (tonB2) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGTTGAAAAAAATAATTTCACCTGGTGGGACAGGTCTGGCTTGGTGGCAGGATCCGATTTTTATGGGTGCTCTGTTGCT
GGCTGTCATTTTACATTCGGCGATTTTAACTCTGCATTTTGCAATGCCAGATCCAGAGGCTGCTGCCAGTAAGGAAATTG
CTGTCAGCATTCGTCCGAGTTCTGAGCAGGTCAAAGATGCCGACTATCTGGCACAGGCAGACCAGCAGGGTTCAGGCCGC
TTCCGAGAGGCTCACCGTATCTCAAGCCAGCTACCGGCCAGTTCACAACAACAGAGTGCGGGTGAGCAGCAGCAGGAGAC
TTTACAGCAGATGCACCAACAGCCTCAAATACAGTTTGAAGACAAAGTCCTGATGACAATCATGAGCTGGCGCAAAGAAG
CGGAGCAGAACCAGCGTAAAAAAGCTTTAGAAGAATTACAGAGCCAGTTTCAGGCCAAGGCAGCAATGGCTGCCAGTCTG
GAAGCCCAGTATTTACAGCGTCAGCAGGATTTCAGCCGTCAGCAACGTATCAAAACGGTGGATGGAATACAGGCCAAGCA
GGATGCAGCAGCTGCCTATCTGGACAAGTTCCGTGAAAAAGTTGAACTCTATGGTAACCGCTATTATCCGCAGCAGGCTA
AGGCTGAGCGCCTAACAGGAGAAGTGCAGCTTATGGTCATCCTGAATGCTCAAGGCGGGATACGTGCAATCCGGTTGCTG
GAAAGTTCAGGGCATACCATTCTAGATGAGGCAGCCAAGGCTTCTGTACGTAAAGGTGCGCCATTTGGGCTATTTGATGC
AGGTATGAAAGATATTTCTGAACTACGCATTGTACGGACGTGGCGATTCGACCCGGCCGAGGCTGAATTCGAAGTAAAAT
AA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BS24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.835

95.222

0.703

Multiple sequence alignment