Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C6I29_RS05785 Genome accession   NZ_CP027365
Coordinates   1247320..1248273 (+) Length   317 a.a.
NCBI ID   WP_034670069.1    Uniprot ID   A0A062BTK0
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242320..1253273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS05770 - 1244392..1245636 (+) 1245 WP_017401194.1 PD-(D/E)XK nuclease family protein -
  C6I29_RS05775 - 1246040..1246258 (+) 219 WP_017401086.1 hypothetical protein -
  C6I29_RS05780 - 1246383..1246868 (-) 486 WP_005025518.1 Lrp/AsnC family transcriptional regulator -
  C6I29_RS05785 ceuB 1247320..1248273 (+) 954 WP_034670069.1 ABC transporter permease Machinery gene
  C6I29_RS05790 - 1248266..1249228 (+) 963 WP_034674734.1 iron chelate uptake ABC transporter family permease subunit -
  C6I29_RS05795 - 1249213..1249977 (+) 765 WP_034670066.1 ABC transporter ATP-binding protein -
  C6I29_RS05800 - 1249987..1250934 (+) 948 WP_034670063.1 siderophore ABC transporter substrate-binding protein -
  C6I29_RS05805 - 1251236..1252444 (-) 1209 WP_017401085.1 MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34636.79 Da        Isoelectric Point: 9.6461

>NTDB_id=276604 C6I29_RS05785 WP_034670069.1 1247320..1248273(+) (ceuB) [Acinetobacter radioresistens strain DSSKY-A-001]
MIKRRYLFLLLVPLAVISLFTGVGEMNITGLLTGNIHEWQLFWTSRLPRLMAILVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLISIILLPAASIFIKTGFAILVTLAGALVFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDL
LQNLAGWLQGDFSTVLNGQYELIYLSIPILIVSYFLANRFVLAGIGEDFATNLGLNYKQTLFLGLILVSVITGVVIVTVG
AIPFLGLIVPNIVSLYLGDNIRKTLSHTAILGALLVLVCDLFGRIVIYPYEVSVSLIMGVLGSVLFLWLLLRRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=276604 C6I29_RS05785 WP_034670069.1 1247320..1248273(+) (ceuB) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGATTAAACGCCGTTACCTGTTTCTTTTGCTTGTTCCTCTTGCTGTTATTTCGTTATTTACAGGTGTGGGCGAAATGAA
TATTACCGGATTACTGACAGGCAATATTCATGAATGGCAATTATTCTGGACCAGCCGTTTACCACGCTTAATGGCCATTT
TAGTTGCAGGTGCAGGGCTGAGTGTTTGTGGGCTGATTATGCAGTCACTCAGCCGGAACCGTTTTGTTTCCCCAACTACA
GCCGGTCTTTATGATTGTGCCCGGTTAGGTGTTCTCATCTCGATTATCCTGTTGCCAGCCGCTTCTATTTTTATTAAAAC
CGGTTTTGCAATTTTAGTTACATTGGCCGGTGCATTGGTTTTTATGAGTATTCTAGCCACACTCAAGCATCGGGATACCG
TTTTTGTTCCTCTGGTTGGTATGATCTTTGGCAGTATTATTTCTGCATTTACGACTTTTATCGCTTTGCAAATGGACTTG
TTACAAAATCTGGCGGGATGGTTACAGGGAGACTTTTCAACCGTTCTAAATGGTCAATATGAGCTGATCTATTTAAGTAT
ACCCATTTTAATAGTGAGTTATTTTCTGGCCAATCGCTTTGTCTTGGCAGGTATTGGGGAAGACTTTGCAACTAATTTAG
GTCTCAATTATAAACAGACCTTATTTTTAGGACTAATTCTGGTATCTGTCATTACTGGTGTAGTCATCGTCACAGTTGGA
GCTATCCCATTCTTAGGTTTGATTGTTCCCAATATTGTAAGTCTGTATCTCGGAGATAATATCCGCAAGACTTTATCGCA
TACTGCAATTTTAGGGGCTTTACTGGTACTGGTCTGTGATCTGTTTGGACGTATAGTGATTTATCCGTACGAAGTTTCAG
TAAGTCTGATTATGGGTGTACTGGGCAGTGTGCTTTTCTTGTGGCTCTTGCTACGGAGGTACCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BTK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.118

98.738

0.505

Multiple sequence alignment