Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   C6I29_RS01415 Genome accession   NZ_CP027365
Coordinates   312562..314787 (-) Length   741 a.a.
NCBI ID   WP_034676133.1    Uniprot ID   A0A062BT51
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307562..319787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS01395 - 307826..308779 (-) 954 WP_005405721.1 DnaJ C-terminal domain-containing protein -
  C6I29_RS01400 - 308935..309396 (-) 462 WP_005016918.1 DUF2147 domain-containing protein -
  C6I29_RS01405 - 309721..310596 (-) 876 WP_005023129.1 Hsp33 family molecular chaperone HslO -
  C6I29_RS01410 - 310646..312478 (-) 1833 WP_005023131.1 cation:proton antiporter -
  C6I29_RS01415 priA 312562..314787 (-) 2226 WP_034676133.1 primosomal protein N' Machinery gene
  C6I29_RS01420 gspF 314943..316148 (+) 1206 WP_005023135.1 type II secretion system inner membrane protein GspF -
  C6I29_RS01425 gspG 316186..316623 (+) 438 WP_005023137.1 type II secretion system major pseudopilin GspG -
  C6I29_RS01430 - 316960..317295 (+) 336 WP_005023139.1 hypothetical protein -
  C6I29_RS01435 lnt 317373..318932 (-) 1560 WP_005023142.1 apolipoprotein N-acyltransferase -
  C6I29_RS01440 - 318929..319768 (-) 840 WP_005016900.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84225.39 Da        Isoelectric Point: 9.1601

>NTDB_id=276597 C6I29_RS01415 WP_034676133.1 312562..314787(-) (priA) [Acinetobacter radioresistens strain DSSKY-A-001]
MPSSSHNNCCIYRVRVAVPVHLYDSFDYLLSAEQYLQAEVGARVAVSFGRQNLIGIIVEKISPDVMPDPRIKLKTITELL
DKEAIIDNKVLSLLTWSAQYYQFPLGEVMQCALPGLLRQGKPLNLLARVWKVVQPDAEQLLKRSIKQQDAYKILKLHAAG
TTEDILNLSGVETATLKTLEKKEIVRCELTAINTTPEPVQLAQMPLTPNEEQHKAIQRILKSLKKFQAFLLDGLTGSGKT
EVYLQVMYEVLKQGKQILVLVPEIGLTPQTISRFKSRFNVDIVLLHSGLSESKRLQAWQHAQTGKASIILGTRSAIYTSL
PRLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSLDSYHLVEQNKLTRLELNQRAGNAVLPKMQL
IDLKVAKKQHGISEQLIKQIQQRLDKKEQVLVFLNRRGYAPVLVCNHCGWQANCPHCDAHFTLHTQPYNHLHCHHCGSIH
RVPESCPECQQTTLKTLGMGTAKVEETLTELFPDFDVIRVDRDSTSRVGQWDRIYQRIHQSQPAILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSFDFRAPERTAQLIIQVAGRAGRGDRRGEVYLQTLRPDHPLLTTLIEKDYRAFAKQALIERQQAQL
PPYRYTALVRADSRNQQYSQEFVAEIARKLRELAGSQVDIWGPIPAPMERKAGRYRAHLVLLSADRAQLHFYLRQWWAMV
VQQSRQHQLKLSIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=276597 C6I29_RS01415 WP_034676133.1 312562..314787(-) (priA) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGCCTAGCTCGTCCCATAATAACTGCTGTATATACCGTGTCCGGGTAGCTGTACCTGTTCATCTCTATGATAGTTTTGA
CTATCTGCTTAGTGCCGAACAATACTTACAGGCAGAAGTCGGTGCGCGGGTAGCAGTATCTTTTGGACGGCAGAATCTGA
TTGGTATCATTGTAGAGAAAATCTCTCCCGATGTTATGCCTGATCCGCGTATCAAGCTTAAGACTATTACTGAGCTGCTC
GACAAGGAAGCCATTATAGACAACAAAGTTTTAAGTTTGTTGACATGGTCTGCACAGTATTATCAATTTCCTTTGGGTGA
GGTAATGCAATGTGCTCTACCCGGCCTGTTGCGTCAGGGTAAACCGCTAAATCTGCTGGCTCGAGTCTGGAAGGTGGTAC
AGCCTGATGCAGAACAGCTGCTCAAGCGTTCAATCAAGCAGCAAGATGCTTATAAGATTTTAAAATTACATGCAGCCGGT
ACAACAGAAGACATTCTGAATTTAAGTGGTGTTGAAACTGCCACCTTAAAAACTCTTGAAAAAAAAGAAATTGTTCGCTG
TGAATTAACAGCAATAAATACCACGCCTGAACCGGTGCAGCTGGCGCAAATGCCACTCACACCCAATGAAGAACAGCACA
AAGCAATTCAGCGTATTTTAAAATCATTGAAGAAATTTCAGGCCTTCTTACTTGATGGTTTGACTGGTAGCGGCAAAACA
GAAGTTTATTTGCAGGTGATGTACGAAGTACTAAAACAGGGCAAGCAGATATTGGTTCTGGTTCCCGAAATCGGGTTGAC
ACCTCAAACCATTTCCCGGTTTAAATCACGGTTTAATGTAGATATTGTACTATTACATTCTGGTTTGAGTGAATCCAAAC
GTTTGCAAGCATGGCAGCATGCCCAAACCGGCAAGGCTTCCATTATTCTCGGAACCCGTTCAGCAATTTATACGTCGTTG
CCCCGGCTGGGACTGATTATTCTGGATGAGGAGCATGATCTGTCATTCAAGCAACAGGAAGGCTTTCGCTACCATGCCCG
TGACGTAGCTCTCTACCGTGCCCATCTGGAAAACTGTCCGATTATTCTTGGCTCAGCCACACCCAGTCTGGATAGCTATC
ATCTGGTAGAACAGAATAAACTGACACGACTGGAACTTAACCAGCGGGCTGGCAATGCGGTCTTACCCAAAATGCAGTTA
ATAGATCTGAAAGTAGCCAAAAAACAGCATGGAATTAGTGAACAGCTCATCAAGCAGATTCAGCAGCGGCTGGACAAAAA
AGAACAGGTGCTGGTTTTTTTAAACCGACGTGGTTATGCGCCGGTACTGGTCTGTAATCATTGTGGCTGGCAGGCCAACT
GCCCCCATTGTGATGCGCATTTTACTCTGCATACACAGCCCTATAATCATCTGCACTGTCATCATTGTGGTTCCATTCAT
CGTGTACCGGAAAGCTGTCCCGAATGTCAGCAAACGACCTTAAAAACGCTCGGGATGGGCACTGCCAAGGTTGAAGAAAC
CCTGACCGAGCTCTTTCCAGATTTTGATGTAATTCGTGTGGACCGTGACAGTACCAGCCGGGTTGGCCAATGGGACCGTA
TCTATCAGCGGATTCATCAAAGCCAGCCTGCTATTTTACTCGGTACCCAAATGTTAGCCAAGGGCCATCATTTTCCCTAC
GTGACCTTGGTTGCGATTCTGGATATTGATGCCGGACTGCTCAGCTTTGATTTTCGTGCGCCGGAACGTACAGCCCAGCT
CATCATTCAGGTGGCTGGTCGTGCTGGCCGTGGAGACCGCAGAGGCGAAGTCTATCTGCAAACTTTAAGGCCTGATCATC
CACTGTTAACTACATTGATCGAGAAAGACTACCGTGCTTTTGCCAAACAAGCACTCATTGAGCGCCAGCAGGCACAGCTG
CCGCCTTATCGTTATACGGCACTGGTACGAGCCGACTCCAGAAACCAGCAATACAGTCAGGAATTTGTAGCTGAAATTGC
TCGTAAGCTACGTGAACTTGCAGGTAGTCAGGTTGATATCTGGGGCCCTATCCCTGCCCCTATGGAGCGTAAGGCGGGTC
GCTACCGGGCCCATCTGGTCCTGCTTTCAGCTGACCGGGCACAGCTGCATTTTTATTTACGGCAATGGTGGGCGATGGTA
GTACAACAGTCACGACAGCATCAGTTAAAACTGAGTATTGACGTTGACCCGCAGGAACTCAGCTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(207-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BT51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

75.102

99.19

0.745

Multiple sequence alignment