Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C6I29_RS01225 Genome accession   NZ_CP027365
Coordinates   264904..265764 (-) Length   286 a.a.
NCBI ID   WP_005016989.1    Uniprot ID   A0A062C1I7
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 259904..270764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS14705 - 261947..262084 (+) 138 WP_005405738.1 hypothetical protein -
  C6I29_RS01205 - 262152..262475 (+) 324 WP_005016998.1 pyrimidine/purine nucleoside phosphorylase -
  C6I29_RS01210 rlmB 262579..263334 (+) 756 WP_005016996.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  C6I29_RS01215 - 263359..264294 (+) 936 WP_005016993.1 DMT family transporter -
  C6I29_RS01220 coaE 264291..264902 (-) 612 WP_005016991.1 dephospho-CoA kinase -
  C6I29_RS01225 pilD 264904..265764 (-) 861 WP_005016989.1 prepilin peptidase Machinery gene
  C6I29_RS01230 pilC 265764..266990 (-) 1227 WP_005016988.1 type II secretion system F family protein Machinery gene
  C6I29_RS01235 pilB 267020..268729 (-) 1710 WP_005023073.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C6I29_RS01240 tpiA 269018..269812 (+) 795 WP_005023075.1 triose-phosphate isomerase -
  C6I29_RS01245 secG 269823..270152 (+) 330 WP_005023077.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31915.24 Da        Isoelectric Point: 7.4686

>NTDB_id=276594 C6I29_RS01225 WP_005016989.1 264904..265764(-) (pilD) [Acinetobacter radioresistens strain DSSKY-A-001]
MQELITLLSNNPTALYIVVGLFSLCIGSFLNVVILRTPKMMEQEWRNECQLLLHPDQPLIDETKLTLSYPASTCPNCHTP
IRWYQNLPLVSWLLLRGKCGQCQNPISIRYPLVELLTALCSLIVVAVYGPTLQMLFGLLLTWALITLTFIDFDTQLLPDR
YTLPLAALGLALNSYALYTSASSAIWGYVIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIVLLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=276594 C6I29_RS01225 WP_005016989.1 264904..265764(-) (pilD) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGCAAGAATTAATTACCTTATTAAGTAATAACCCGACTGCGCTCTACATTGTGGTTGGGCTTTTCAGTCTATGTATTGG
CAGTTTTTTAAATGTCGTTATTCTTCGCACTCCTAAAATGATGGAGCAGGAATGGCGCAATGAATGTCAGTTGTTGCTTC
ATCCAGATCAGCCCCTAATTGATGAAACAAAACTCACGCTCAGCTATCCGGCTTCTACCTGTCCCAACTGTCATACGCCG
ATTCGCTGGTATCAGAATCTGCCTTTAGTCAGCTGGCTGCTACTCAGAGGCAAATGTGGTCAATGCCAGAATCCGATCAG
TATCCGTTACCCTCTAGTTGAACTTTTAACTGCTCTGTGTTCACTTATTGTAGTAGCTGTCTATGGCCCTACCCTGCAAA
TGCTATTTGGTCTGTTACTGACTTGGGCATTAATTACCCTGACCTTCATCGATTTTGATACACAACTGCTTCCAGACCGG
TATACCCTGCCGCTTGCCGCCCTAGGCCTAGCTCTGAACAGTTATGCATTATATACCTCGGCAAGCTCTGCTATTTGGGG
TTATGTGATTGGGTTTTTATGCTTATGGATTGTATATTATCTGTTTAAAGTCATCACCGGTAAAGAAGGCATGGGATACG
GGGACTTTAAGTTACTGGCCGCACTCGGAGCCTGGATGGGTCCTTTAATGCTGCCTTTAATTGTGCTACTTTCATCTTTA
GTCGGGGCAATTATTGGTATCGTACTGCTCAAGATTCGCAAGGAAAACCAGCCTTTTGCCTTTGGTCCCTATATTGCGAT
TGCCGGCTGGATCGCTTTTTTATGGGGTGAGCAAATTATGAAAATTTATCTGGGAGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062C1I7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

79.72

100

0.797
  pilD Acinetobacter baumannii D1279779

78.671

100

0.787
  pilD Vibrio cholerae strain A1552

53.875

94.755

0.51
  pilD Vibrio campbellii strain DS40M4

51.087

96.503

0.493
  pilD Neisseria gonorrhoeae MS11

47.312

97.552

0.462

Multiple sequence alignment