Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   C6I29_RS00970 Genome accession   NZ_CP027365
Coordinates   208429..208755 (+) Length   108 a.a.
NCBI ID   WP_005017085.1    Uniprot ID   A0A062BQE3
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 203429..213755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS00945 hemC 204059..204979 (+) 921 WP_026444029.1 hydroxymethylbilane synthase -
  C6I29_RS00950 - 204985..205767 (+) 783 WP_105919051.1 uroporphyrinogen-III synthase -
  C6I29_RS00955 - 205764..206612 (+) 849 WP_005023002.1 hypothetical protein -
  C6I29_RS00960 - 206622..207815 (+) 1194 WP_005023003.1 membrane protein -
  C6I29_RS00965 - 207825..208262 (+) 438 WP_005023004.1 acyl-CoA thioesterase -
  C6I29_RS00970 hns 208429..208755 (+) 327 WP_005017085.1 H-NS family nucleoid-associated regulatory protein Regulator
  C6I29_RS00975 gspN 208921..209664 (+) 744 WP_017400648.1 type II secretion system protein N -
  C6I29_RS00980 - 209664..210506 (+) 843 WP_005023006.1 type II secretion system protein N -
  C6I29_RS00985 gspD 210548..212803 (+) 2256 WP_017400649.1 type II secretion system secretin GspD -
  C6I29_RS00990 - 212869..213528 (+) 660 WP_017400650.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12369.08 Da        Isoelectric Point: 4.8451

>NTDB_id=276593 C6I29_RS00970 WP_005017085.1 208429..208755(+) (hns) [Acinetobacter radioresistens strain DSSKY-A-001]
MKPDISELSVEDLKRLQLEAEALIASKKDQAVDEAYEQVLEIAENVGLTIEQLLEFGAQKRKKTTRKSVEPRYRNTENPE
ETWTGRGKQPRWLVAALEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=276593 C6I29_RS00970 WP_005017085.1 208429..208755(+) (hns) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGAAGCCAGATATTAGTGAACTTTCGGTAGAAGATCTCAAAAGATTACAGCTTGAAGCCGAAGCATTAATCGCCAGCAA
AAAAGATCAAGCAGTAGATGAAGCTTATGAACAGGTTTTAGAAATTGCTGAAAATGTGGGTCTGACTATTGAACAGTTGC
TAGAATTTGGAGCGCAAAAGCGCAAGAAAACAACACGTAAATCAGTAGAGCCACGTTATCGTAATACTGAAAATCCTGAA
GAAACTTGGACAGGACGTGGTAAGCAGCCACGCTGGTTAGTAGCAGCTCTTGAAAAAGGTGCAAAACTTGAAGATTTTCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BQE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment