Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   D6022_RS03830 Genome accession   NZ_CP032538
Coordinates   754761..754991 (+) Length   76 a.a.
NCBI ID   WP_003178210.1    Uniprot ID   A0A6I1MI94
Organism   Bacillus licheniformis strain MT-B06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 749761..759991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS03810 glmU 750973..752343 (+) 1371 WP_003178200.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  D6022_RS03815 - 752364..753314 (+) 951 WP_003178203.1 ribose-phosphate diphosphokinase -
  D6022_RS03820 - 753395..754021 (+) 627 WP_003178205.1 50S ribosomal protein L25/general stress protein Ctc -
  D6022_RS03825 pth 754138..754704 (+) 567 WP_017474858.1 aminoacyl-tRNA hydrolase -
  D6022_RS03830 subA/fin 754761..754991 (+) 231 WP_003178210.1 anti-sigma-F factor Fin family protein Machinery gene
  D6022_RS03835 mfd 755056..758589 (+) 3534 WP_017474857.1 transcription-repair coupling factor -
  D6022_RS03840 spoVT 758727..759263 (+) 537 WP_003178213.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8950.85 Da        Isoelectric Point: 5.3733

>NTDB_id=276581 D6022_RS03830 WP_003178210.1 754761..754991(+) (subA/fin) [Bacillus licheniformis strain MT-B06]
MALHYYCRHCGVKVGSLDHSYVNSEQLGFNHLTNDERNDMISYMDNGDLHVKTICEDCQEALERNPDYHQYHSFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=276581 D6022_RS03830 WP_003178210.1 754761..754991(+) (subA/fin) [Bacillus licheniformis strain MT-B06]
ATGGCTTTACATTATTATTGCCGGCATTGCGGCGTTAAAGTCGGAAGTCTTGACCATTCTTATGTAAACAGTGAACAGTT
AGGCTTTAACCACTTAACAAATGATGAAAGAAACGATATGATTTCTTATATGGATAATGGGGATTTACACGTGAAGACGA
TATGTGAAGATTGTCAAGAAGCGCTTGAGCGAAACCCGGATTATCACCAATATCATTCATTTATTCAATAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MI94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

77.632

100

0.776