Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   D6I99_RS03090 Genome accession   NZ_CP032522
Coordinates   585357..585740 (+) Length   127 a.a.
NCBI ID   WP_002870088.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580357..590740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS03070 - 580436..582370 (-) 1935 WP_057035530.1 ribonuclease R family protein -
  D6I99_RS03075 ilvC 582489..583511 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  D6I99_RS03080 - 583515..584597 (+) 1083 WP_052817304.1 divergent polysaccharide deacetylase family protein -
  D6I99_RS03085 dprA 584587..585360 (+) 774 WP_052794066.1 DNA-processing protein DprA Machinery gene
  D6I99_RS03090 dprB 585357..585740 (+) 384 WP_002870088.1 Holliday junction resolvase RuvX Machinery gene
  D6I99_RS03095 - 585769..586608 (+) 840 WP_079744478.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  D6I99_RS03100 msrA 586785..587282 (-) 498 WP_052817308.1 peptide-methionine (S)-S-oxide reductase MsrA -
  D6I99_RS03105 ppa 587323..587841 (-) 519 WP_002871349.1 inorganic diphosphatase -
  D6I99_RS03110 adk 587851..588429 (-) 579 WP_002855137.1 adenylate kinase -
  D6I99_RS03115 aspS 588426..590177 (-) 1752 WP_136696185.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14158.69 Da        Isoelectric Point: 9.0848

>NTDB_id=276522 D6I99_RS03090 WP_002870088.1 585357..585740(+) (dprB) [Campylobacter jejuni strain BC]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=276522 D6I99_RS03090 WP_002870088.1 585357..585740(+) (dprB) [Campylobacter jejuni strain BC]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449