NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	Eco118UI_RS21565	Genome accession	NZ_CP032515
Coordinates	4293259..4293927 (-)	Length	222 a.a.
NCBI ID	WP_001297375.1	Uniprot ID	P65957
Organism	Escherichia coli strain 118UI
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4288259..4298927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Eco118UI_RS21535 (Eco118UI_21690)	rfaQ	4288437..4289495 (-)	1059	WP_000360390.1	lipopolysaccharide core heptosyltransferase RfaQ	-
Eco118UI_RS21540 (Eco118UI_21695)	waaA	4289908..4291185 (+)	1278	WP_000891574.1	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	-
Eco118UI_RS21545 (Eco118UI_21700)	coaD	4291193..4291672 (+)	480	WP_001171873.1	pantetheine-phosphate adenylyltransferase	-
Eco118UI_RS21550 (Eco118UI_21705)	mutM	4291711..4292520 (-)	810	WP_001114533.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
Eco118UI_RS21555 (Eco118UI_21710)	rpmG	4292618..4292785 (-)	168	WP_001051798.1	50S ribosomal protein L33	-
Eco118UI_RS21560 (Eco118UI_21715)	rpmB	4292806..4293042 (-)	237	WP_000091955.1	50S ribosomal protein L28	-
Eco118UI_RS21565 (Eco118UI_21720)	radC	4293259..4293927 (-)	669	WP_001297375.1	DNA repair protein RadC	Machinery gene
Eco118UI_RS21570 (Eco118UI_21725)	coaBC	4294099..4295319 (+)	1221	WP_000050153.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
Eco118UI_RS21575 (Eco118UI_21730)	dut	4295297..4295755 (+)	459	WP_000976070.1	dUTP diphosphatase	-
Eco118UI_RS21580 (Eco118UI_21735)	slmA	4295862..4296458 (+)	597	WP_000818601.1	nucleoid occlusion factor SlmA	-
Eco118UI_RS21585 (Eco118UI_21740)	pyrE	4296495..4297136 (-)	642	WP_000806177.1	orotate phosphoribosyltransferase	-
Eco118UI_RS21590 (Eco118UI_21745)	rph	4297202..4297918 (-)	717	WP_001247093.1	ribonuclease PH	-
Eco118UI_RS21595 (Eco118UI_21750)	yicC	4298045..4298908 (+)	864	WP_000621344.1	YicC/YloC family endoribonuclease	-

Sequence

Protein

Download Length: 222 a.a. Molecular weight: 25258.35 Da Isoelectric Point: 7.9748

                                >NTDB_id=276488 Eco118UI_RS21565 WP_001297375.1 4293259..4293927(-) (radC) [Escherichia coli strain 118UI]

MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL

KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI

KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide

Download Length: 669 bp

                                >NTDB_id=276488 Eco118UI_RS21565 WP_001297375.1 4293259..4293927(-) (radC) [Escherichia coli strain 118UI]

GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT

GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT

CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA

AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC

GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAAGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG

TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA

AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT

TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG

TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Haemophilus influenzae Rd KW20	49.55	100	0.496

Detailed information NTG0276488