Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6I22_RS02785 Genome accession   NZ_CP027349
Coordinates   570963..572342 (+) Length   459 a.a.
NCBI ID   WP_053267373.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain b-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 565963..577342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I22_RS02760 (C6I22_02745) - 566832..568163 (-) 1332 WP_053267376.1 aminopeptidase C -
  C6I22_RS02765 (C6I22_02750) rpiA 568239..568922 (-) 684 WP_053267375.1 ribose-5-phosphate isomerase RpiA -
  C6I22_RS02770 (C6I22_02755) - 568931..569227 (-) 297 WP_053267374.1 GNAT family N-acetyltransferase -
  C6I22_RS02775 (C6I22_02760) - 569366..569902 (+) 537 WP_003640928.1 dUTP diphosphatase -
  C6I22_RS02785 (C6I22_02770) radA 570963..572342 (+) 1380 WP_053267373.1 DNA repair protein RadA Machinery gene
  C6I22_RS02790 (C6I22_02775) - 572358..573533 (+) 1176 WP_003640931.1 PIN/TRAM domain-containing protein -
  C6I22_RS02795 (C6I22_02780) gltX 573859..575349 (+) 1491 WP_003640932.1 glutamate--tRNA ligase -
  C6I22_RS02800 (C6I22_02785) cysS 575627..577039 (+) 1413 WP_003644975.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50005.29 Da        Isoelectric Point: 7.7217

>NTDB_id=276478 C6I22_RS02785 WP_053267373.1 570963..572342(+) (radA) [Lactiplantibacillus plantarum strain b-2]
MAKAKTQFVCSNCGYSTPRYLGRCPNCGEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVSLTKTPRVKTKLKEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLAETGGSVLYVTGEESASQVKMRADRLAVSSEDFYLYPETDMSNIRST
IESTHPEFVVIDSVQTMQEPDMDSAIGSVSQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALVTPTVFGN
AKRTASGLDHNRVSLIMAVLEKRASLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGE
VRRVNRIESRVGEAAKLGFKRIFIPKNNLQGWDIPTGIEVIGVATLKEALQLALQQPNY

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=276478 C6I22_RS02785 WP_053267373.1 570963..572342(+) (radA) [Lactiplantibacillus plantarum strain b-2]
GTGGCAAAAGCAAAAACTCAGTTTGTTTGTTCTAACTGTGGTTATTCAACACCGCGATATTTAGGACGGTGTCCGAACTG
TGGTGAATGGAATACACTAACTGAAGAACATTTTGATACAAAACCGGACCGCAAGTCGCGGGTGAGCTTTGCGGGTAAGT
CGGCTAAGCCACAACGACTCAAAGAAGTGTCGCTGACTAAGACACCGCGTGTCAAGACTAAGCTGAAAGAGTTCAACCGG
GTCTTAGGTGGCGGTGTTGTGCCAGGTTCACTAGTTTTGATCGGTGGTGATCCAGGTATTGGTAAGTCAACGTTACTACT
GCAAGTTTCGGGGCAATTGGCCGAGACGGGTGGTTCCGTACTATACGTGACTGGTGAAGAAAGTGCCTCCCAAGTGAAGA
TGCGGGCGGACCGGCTGGCTGTTAGCAGTGAAGACTTTTATCTTTATCCTGAGACTGATATGTCGAATATTCGTTCAACG
ATTGAATCGACGCATCCAGAATTTGTGGTCATTGATTCGGTACAAACGATGCAAGAACCTGATATGGACTCTGCGATTGG
TTCAGTATCACAAATCCGTGAAATTACGGCTGAACTACTGCAAATTGCGAAGACTAACGGCATTACCATTTTTATTGTGG
GCCATGTGACTAAGGGTGGTGCCATTGCGGGGCCTAAGATCTTAGAACATATGGTTGATACCGTTTTGTACTTTGAAGGT
GATTTACATCATACGTACCGCATTTTACGGGCAGTCAAGAATCGATTCGGGTCAACGAATGAACTGGGAATATTTGAGAT
GCGGACGGGCGGTTTGTATGAAGTGGCCAATCCGTCAGAGATCTTCTTGGAAGAACGTCTGAAGGATGCTACGGGTTCCG
CCATCGTTGTTTCAATGGAAGGAACACGACCAATCTTAGTAGAAGTTCAAGCGCTGGTAACGCCAACGGTCTTTGGTAAT
GCGAAGCGGACCGCAAGTGGCTTGGATCATAATCGAGTCTCCTTGATTATGGCAGTGTTGGAAAAACGGGCGAGTCTAAT
GCTTCAGAACCAGGACGCGTATTTGAAAGCGGCCGGTGGCGTTAAGTTAGATGAACCGGCGATTGACTTAGCTATTGCGG
TCAGTGTGGCTTCTAGTTATCGTGACCAGCAGACTCGTCCGAGTGACTGTTTTGTTGGTGAAGTCGGTTTGACTGGTGAG
GTTCGGCGGGTCAACCGGATTGAATCACGAGTTGGTGAGGCGGCTAAGCTAGGTTTTAAACGTATCTTTATTCCTAAGAA
TAATCTGCAAGGTTGGGATATCCCAACTGGAATCGAAGTAATTGGAGTTGCCACGCTAAAAGAAGCGCTCCAATTAGCAT
TACAACAACCAAATTATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(59-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.627

98.257

0.664
  radA Streptococcus pneumoniae D39

67.627

98.257

0.664
  radA Streptococcus pneumoniae R6

67.627

98.257

0.664
  radA Streptococcus pneumoniae TIGR4

67.627

98.257

0.664
  radA Streptococcus mitis NCTC 12261

67.627

98.257

0.664
  radA Streptococcus mitis SK321

67.627

98.257

0.664
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

99.346

0.654

Multiple sequence alignment