Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6N23_RS20755 Genome accession   NZ_CP027342
Coordinates   3968417..3969046 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2014C-4587     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3957339..3980231 3968417..3969046 within 0


Gene organization within MGE regions


Location: 3957339..3980231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N23_RS20695 - 3957339..3958358 (+) 1020 WP_001367167.1 tyrosine-type recombinase/integrase -
  C6N23_RS20700 yccA 3958766..3959425 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  C6N23_RS20705 tusE 3959516..3959845 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  C6N23_RS20710 yccX 3959842..3960120 (-) 279 WP_000048243.1 acylphosphatase -
  C6N23_RS20715 rlmI 3960215..3961405 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  C6N23_RS20720 hspQ 3961463..3961780 (+) 318 WP_001295356.1 heat shock protein HspQ -
  C6N23_RS20725 yccU 3961825..3962238 (-) 414 WP_000665217.1 CoA-binding protein -
  C6N23_RS20730 yccT 3962411..3963073 (+) 663 WP_000847791.1 DUF2057 family protein -
  C6N23_RS20735 mgsA 3963169..3963627 (+) 459 WP_000424181.1 methylglyoxal synthase -
  C6N23_RS20740 helD 3963659..3965713 (-) 2055 WP_000420536.1 DNA helicase IV -
  C6N23_RS20745 yccF 3965836..3966282 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6N23_RS20750 yccS 3966292..3968454 (+) 2163 WP_000875015.1 YccS family putative transporter -
  C6N23_RS20755 sxy/tfoX 3968417..3969046 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6N23_RS20760 sulA 3969265..3969774 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6N23_RS20770 ompA 3970131..3971183 (+) 1053 WP_000750419.1 porin OmpA -
  C6N23_RS20775 matP 3971259..3971711 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6N23_RS20780 ycbZ 3971897..3973657 (+) 1761 WP_000156526.1 Lon protease family protein -
  C6N23_RS20785 fabA 3973726..3974244 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  C6N23_RS20790 rmf 3974314..3974481 (-) 168 WP_000828648.1 ribosome modulation factor -
  C6N23_RS20795 pqiC 3974737..3975300 (-) 564 WP_000759123.1 membrane integrity-associated transporter subunit PqiC -
  C6N23_RS20800 pqiB 3975297..3976937 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  C6N23_RS20805 pqiA 3976942..3978195 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  C6N23_RS20810 uup 3978291..3980231 (-) 1941 WP_097473806.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276449 C6N23_RS20755 WP_000839153.1 3968417..3969046(-) (sxy/tfoX) [Escherichia coli strain 2014C-4587]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276449 C6N23_RS20755 WP_000839153.1 3968417..3969046(-) (sxy/tfoX) [Escherichia coli strain 2014C-4587]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment