Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6N25_RS17200 Genome accession   NZ_CP027340
Coordinates   3228972..3229601 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2015C-3121     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3223972..3234601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N25_RS17175 ycbZ 3224373..3226133 (-) 1761 WP_000156526.1 Lon protease family protein -
  C6N25_RS17180 matP 3226319..3226771 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6N25_RS17185 ompA 3226847..3227887 (-) 1041 WP_000750416.1 porin OmpA -
  C6N25_RS17195 sulA 3228244..3228753 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6N25_RS17200 sxy/tfoX 3228972..3229601 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6N25_RS17205 yccS 3229564..3231726 (-) 2163 WP_000875020.1 YccS family putative transporter -
  C6N25_RS17210 yccF 3231736..3232182 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C6N25_RS17215 helD 3232305..3234359 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276424 C6N25_RS17200 WP_000839153.1 3228972..3229601(+) (sxy/tfoX) [Escherichia coli strain 2015C-3121]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276424 C6N25_RS17200 WP_000839153.1 3228972..3229601(+) (sxy/tfoX) [Escherichia coli strain 2015C-3121]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment