Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MJ63_RS02280 Genome accession   NZ_CP027331
Coordinates   431233..431862 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C-3277     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 426233..436862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ63_RS02255 ycbZ 426635..428395 (-) 1761 WP_032344991.1 Lon protease family protein -
  MJ63_RS02260 matP 428581..429033 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MJ63_RS02265 ompA 429108..430148 (-) 1041 WP_000750416.1 porin OmpA -
  MJ63_RS02275 sulA 430505..431014 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MJ63_RS02280 sxy/tfoX 431233..431862 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MJ63_RS02285 yccS 431825..433987 (-) 2163 WP_000875023.1 YccS family putative transporter -
  MJ63_RS02290 yccF 433997..434443 (-) 447 WP_001261235.1 YccF domain-containing protein -
  MJ63_RS02295 helD 434566..436621 (+) 2056 Protein_424 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276366 MJ63_RS02280 WP_000839153.1 431233..431862(+) (sxy/tfoX) [Escherichia coli strain 2013C-3277]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276366 MJ63_RS02280 WP_000839153.1 431233..431862(+) (sxy/tfoX) [Escherichia coli strain 2013C-3277]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment