Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6N65_RS15385 Genome accession   NZ_CP027325
Coordinates   2950280..2950909 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C-4830     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2945280..2955909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N65_RS15360 ycbZ 2945681..2947441 (-) 1761 WP_032206208.1 Lon protease family protein -
  C6N65_RS15365 matP 2947627..2948079 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6N65_RS15370 ompA 2948155..2949195 (-) 1041 WP_000750416.1 porin OmpA -
  C6N65_RS15380 sulA 2949552..2950061 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6N65_RS15385 sxy/tfoX 2950280..2950909 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6N65_RS15390 yccS 2950872..2953034 (-) 2163 WP_074433556.1 YccS family putative transporter -
  C6N65_RS15395 yccF 2953044..2953490 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C6N65_RS15400 helD 2953613..2955667 (+) 2055 WP_032206206.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276356 C6N65_RS15385 WP_000839153.1 2950280..2950909(+) (sxy/tfoX) [Escherichia coli strain 2013C-4830]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276356 C6N65_RS15385 WP_000839153.1 2950280..2950909(+) (sxy/tfoX) [Escherichia coli strain 2013C-4830]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment