Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MJ73_RS08795 Genome accession   NZ_CP027312
Coordinates   1647196..1647825 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C-3181     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642196..1652825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ73_RS08780 helD 1642438..1644492 (-) 2055 WP_001315388.1 DNA helicase IV -
  MJ73_RS08785 yccF 1644615..1645061 (+) 447 WP_001261235.1 YccF domain-containing protein -
  MJ73_RS08790 yccS 1645071..1647233 (+) 2163 WP_000875046.1 YccS family putative transporter -
  MJ73_RS08795 sxy/tfoX 1647196..1647825 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MJ73_RS08800 sulA 1648044..1648553 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MJ73_RS08810 ompA 1648910..1649962 (+) 1053 WP_001361736.1 porin OmpA -
  MJ73_RS08815 matP 1650037..1650489 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  MJ73_RS08820 ycbZ 1650675..1652435 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276283 MJ73_RS08795 WP_000839153.1 1647196..1647825(-) (sxy/tfoX) [Escherichia coli strain 2013C-3181]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276283 MJ73_RS08795 WP_000839153.1 1647196..1647825(-) (sxy/tfoX) [Escherichia coli strain 2013C-3181]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment