Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6N22_RS15425 Genome accession   NZ_CP027310
Coordinates   3026292..3026921 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2014C-4135     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021292..3031921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N22_RS15400 ycbZ 3021682..3023442 (-) 1761 WP_000156526.1 Lon protease family protein -
  C6N22_RS15405 matP 3023628..3024080 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C6N22_RS15410 ompA 3024155..3025207 (-) 1053 WP_000750419.1 porin OmpA -
  C6N22_RS15420 sulA 3025564..3026073 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6N22_RS15425 sxy/tfoX 3026292..3026921 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6N22_RS15430 yccS 3026884..3029046 (-) 2163 WP_000875044.1 YccS family putative transporter -
  C6N22_RS15435 yccF 3029056..3029502 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C6N22_RS15440 helD 3029625..3031679 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276276 C6N22_RS15425 WP_000839153.1 3026292..3026921(+) (sxy/tfoX) [Escherichia coli strain 2014C-4135]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276276 C6N22_RS15425 WP_000839153.1 3026292..3026921(+) (sxy/tfoX) [Escherichia coli strain 2014C-4135]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment