Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4H51_RS04665 Genome accession   NZ_CP032480
Coordinates   966937..968457 (-) Length   506 a.a.
NCBI ID   WP_139544166.1    Uniprot ID   -
Organism   Helicobacter pylori strain 19-C-EK1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 961937..973457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4H51_RS04655 - 963585..964811 (-) 1227 WP_139544164.1 restriction endonuclease subunit S -
  D4H51_RS04660 - 964852..966912 (-) 2061 WP_139544165.1 heavy metal translocating P-type ATPase -
  D4H51_RS04665 comM 966937..968457 (-) 1521 WP_139544166.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4H51_RS04670 def 968460..968987 (-) 528 WP_100981698.1 peptide deformylase -
  D4H51_RS04675 clpP 968992..969579 (-) 588 WP_164872738.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4H51_RS04680 tig 969600..970955 (-) 1356 WP_139544167.1 trigger factor -
  D4H51_RS04685 - 971067..971903 (-) 837 WP_139544168.1 outer membrane protein -
  D4H51_RS04690 hpaA 971931..972713 (-) 783 WP_128026104.1 flagellar sheath lipoprotein HpaA -
  D4H51_RS04695 moaC 972826..973302 (-) 477 WP_001131542.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57207.23 Da        Isoelectric Point: 8.3913

>NTDB_id=276222 D4H51_RS04665 WP_139544166.1 966937..968457(-) (comM) [Helicobacter pylori strain 19-C-EK1]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIVPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSSTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=276222 D4H51_RS04665 WP_139544166.1 966937..968457(-) (comM) [Helicobacter pylori strain 19-C-EK1]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAATTCTATCCAAGAAGCCAAGCAGAGGGTTCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCACCCCCATGCTAAAG
TCATTGTGCCTAAGGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACCAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAATTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCTTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCACAGCAAAATTGAATACGAAAC
CTCTTTTTTGTTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCTCAACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCTCATTCTTGGACTTCAAAAGAGATGCATGAGTTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTATCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.826

100

0.978
  comM Acinetobacter baylyi ADP1

36.008

100

0.364