Detailed information NTG0276208

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4I21_RS07730
• Genome accession: NZ_CP032479
• Coordinates: 1568264..1569499 (-)
• Length: 411 a.a.
• NCBI ID: WP_139543537.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 21-F-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1563264..1574499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I21_RS07690	-	1563383..1565110 (-)	1728	WP_139543531.1	type IV secretory system conjugative DNA transfer family protein	-
D4I21_RS07695	-	1565111..1565668 (-)	558	WP_139543532.1	hypothetical protein	-
D4I21_RS07700	-	1565669..1565959 (-)	291	WP_000159818.1	hypothetical protein	-
D4I21_RS07705	-	1565956..1566411 (-)	456	WP_139543533.1	mobilization protein	-
D4I21_RS07710	-	1566408..1567349 (-)	942	WP_139543534.1	ATPase, T2SS/T4P/T4SS family	-
D4I21_RS07715	-	1567349..1567648 (-)	300	WP_000660141.1	hypothetical protein	-
D4I21_RS07720	-	1567645..1567908 (-)	264	WP_139543535.1	hypothetical protein	-
D4I21_RS07725	-	1567898..1568194 (-)	297	WP_139543536.1	hypothetical protein	-
D4I21_RS07730	comB10	1568264..1569499 (-)	1236	WP_139543537.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I21_RS07735	-	1569496..1571037 (-)	1542	WP_139543538.1	TrbG/VirB9 family P-type conjugative transfer protein	-
D4I21_RS07740	-	1571037..1572020 (-)	984	WP_139543539.1	VirB8/TrbF family protein	-
D4I21_RS08045	-	1572022..1572150 (-)	129	WP_000243255.1	hypothetical protein	-
D4I21_RS07745	-	1572150..1574084 (-)	1935	WP_139543540.1	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46441.57 Da
• Isoelectric Point: 9.9785

>NTDB_id=276208 D4I21_RS07730 WP_139543537.1 1568264..1569499(-) (comB10) [Helicobacter pylori strain 21-F-EK1]
MKKLLLLLEYKIVKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSSNYNTANEDEKTRLVILASRISTQKETQPPISIKNSVSHIKSK
EKQELEKEYGSSGFKNFKRKNIASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=276208 D4I21_RS07730 WP_139543537.1 1568264..1569499(-) (comB10) [Helicobacter pylori strain 21-F-EK1]
ATGAAAAAACTTCTTTTACTCTTGGAGTATAAGATCGTAAAAATTGGATTAATTATTGTGATTGTGTTAGTGGGTTTTTT
TCTTTTTTATGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCCACTTCATCTTATTTGTTTC
AAGCTTACGAAGGTATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGTGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGACTTTAA
TAAAACACTTATCAAACCACAAAGTCCATCTTCCAACTACAATACCGCTAACGAAGATGAAAAAACCCGTTTGGTGATTT
TAGCGTCTCGTATTAGCACCCAAAAAGAAACGCAACCTCCCATTTCTATAAAAAATAGCGTTTCTCACATAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATATAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGCATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	46.482	96.837	0.45