Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4I21_RS06410 Genome accession   NZ_CP032479
Coordinates   1293869..1294327 (+) Length   152 a.a.
NCBI ID   WP_201737881.1    Uniprot ID   -
Organism   Helicobacter pylori strain 21-F-EK1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1288869..1299327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I21_RS06390 dnaK 1288948..1290810 (+) 1863 WP_139543366.1 molecular chaperone DnaK -
  D4I21_RS06395 - 1291050..1291622 (-) 573 WP_139543367.1 hypothetical protein -
  D4I21_RS06400 - 1291751..1292668 (+) 918 WP_201737880.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4I21_RS06405 - 1292689..1293831 (+) 1143 WP_139543369.1 cystathionine gamma-synthase -
  D4I21_RS06410 luxS 1293869..1294327 (+) 459 WP_201737881.1 S-ribosylhomocysteine lyase Regulator
  D4I21_RS06415 - 1294505..1296214 (+) 1710 WP_339326766.1 5'-nucleotidase C-terminal domain-containing protein -
  D4I21_RS06420 tlpB 1296420..1298117 (+) 1698 WP_139543371.1 methyl-accepting chemotaxis protein TlpB -
  D4I21_RS06425 - 1298149..1298931 (+) 783 WP_139543372.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17341.76 Da        Isoelectric Point: 6.6039

>NTDB_id=276196 D4I21_RS06410 WP_201737881.1 1293869..1294327(+) (luxS) [Helicobacter pylori strain 21-F-EK1]
MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGC
QTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKDLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=276196 D4I21_RS06410 WP_201737881.1 1293869..1294327(+) (luxS) [Helicobacter pylori strain 21-F-EK1]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACATGCCAAGCT
TGCACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCTAATTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACGGAGGTTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGCTAAAGGCTACAGAAGTGCCTGCTAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGTGCTA
AGGATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

43.972

92.763

0.408