Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4I21_RS01425 Genome accession   NZ_CP032479
Coordinates   265405..266454 (-) Length   349 a.a.
NCBI ID   WP_139542745.1    Uniprot ID   -
Organism   Helicobacter pylori strain 21-F-EK1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 260405..271454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I21_RS01400 rpsG 260703..261170 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  D4I21_RS01405 fusA 261182..263260 (+) 2079 WP_139542743.1 elongation factor G -
  D4I21_RS01410 - 263781..264771 (-) 991 Protein_267 aldo/keto reductase -
  D4I21_RS01420 - 264992..265216 (+) 225 WP_139542744.1 hypothetical protein -
  D4I21_RS01425 waaF 265405..266454 (-) 1050 WP_139542745.1 lipopolysaccharide heptosyltransferase II Regulator
  D4I21_RS01430 hisS 266516..267844 (+) 1329 WP_139542746.1 histidine--tRNA ligase -
  D4I21_RS01435 asd 267831..268871 (+) 1041 WP_139543555.1 aspartate-semialdehyde dehydrogenase -
  D4I21_RS01440 - 269304..270371 (+) 1068 WP_139542747.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39581.47 Da        Isoelectric Point: 10.0123

>NTDB_id=276173 D4I21_RS01425 WP_139542745.1 265405..266454(-) (waaF) [Helicobacter pylori strain 21-F-EK1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPSSYYAKAAAVLLEKGHEIYFFGAKEDTIVSEEILKLIKGSLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLKAARTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=276173 D4I21_RS01425 WP_139542745.1 265405..266454(-) (waaF) [Helicobacter pylori strain 21-F-EK1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTATCTTAGTGGGCCCACAAATCACTTGTGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAAT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCGAAAAGATGGCCATCTTCTTATTACGCCAAAGCCGCTGCTGTTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACCAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTGCGCCCTGCAAGAAACGAGTTTGTCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.243

97.708

0.364