Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4J00_RS06400 Genome accession   NZ_CP032478
Coordinates   1300859..1301317 (+) Length   152 a.a.
NCBI ID   WP_201736745.1    Uniprot ID   -
Organism   Helicobacter pylori strain 25-A-EK9     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1295859..1306317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4J00_RS06380 dnaK 1295919..1297781 (+) 1863 WP_139519775.1 molecular chaperone DnaK -
  D4J00_RS06385 - 1298034..1298564 (-) 531 WP_236634799.1 hypothetical protein -
  D4J00_RS06390 - 1298732..1299649 (+) 918 WP_201736744.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4J00_RS06395 - 1299679..1300821 (+) 1143 WP_139519776.1 cystathionine gamma-synthase -
  D4J00_RS06400 luxS 1300859..1301317 (+) 459 WP_201736745.1 S-ribosylhomocysteine lyase Regulator
  D4J00_RS06405 - 1301486..1303231 (+) 1746 WP_139519777.1 5'-nucleotidase C-terminal domain-containing protein -
  D4J00_RS06410 tlpB 1303445..1305140 (+) 1696 Protein_1212 methyl-accepting chemotaxis protein TlpB -
  D4J00_RS06415 - 1305171..1305953 (+) 783 WP_139519778.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17308.68 Da        Isoelectric Point: 6.4914

>NTDB_id=276157 D4J00_RS06400 WP_201736745.1 1300859..1301317(+) (luxS) [Helicobacter pylori strain 25-A-EK9]
MKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKNLAHAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=276157 D4J00_RS06400 WP_201736745.1 1300859..1301317(+) (luxS) [Helicobacter pylori strain 25-A-EK9]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACTAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACATGCCTAGCC
TACACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGGTTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCTA
AGAATTTAGCACACGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.143

92.105

0.388