Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6H62_RS01020 Genome accession   NZ_CP027286
Coordinates   215947..217314 (+) Length   455 a.a.
NCBI ID   WP_079481042.1    Uniprot ID   A0A1U6ITY7
Organism   Clostridium chauvoei strain SBP 07/09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 210947..222314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H62_RS00990 (C6H62_00990) trxB 210959..211900 (+) 942 WP_021876908.1 thioredoxin-disulfide reductase -
  C6H62_RS00995 (C6H62_00995) - 211902..212129 (+) 228 WP_079481039.1 glutaredoxin domain-containing protein -
  C6H62_RS01000 (C6H62_01000) - 212167..213630 (+) 1464 WP_021876910.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  C6H62_RS01005 (C6H62_01005) - 213667..213894 (-) 228 WP_021876911.1 glutaredoxin family protein -
  C6H62_RS13455 - 214037..214258 (-) 222 WP_021876912.1 hypothetical protein -
  C6H62_RS01010 (C6H62_01010) - 214328..215050 (+) 723 WP_079481040.1 GntR family transcriptional regulator -
  C6H62_RS01015 (C6H62_01015) nagB 215047..215778 (+) 732 WP_079481041.1 glucosamine-6-phosphate deaminase -
  C6H62_RS01020 (C6H62_01020) radA 215947..217314 (+) 1368 WP_079481042.1 DNA repair protein RadA Machinery gene
  C6H62_RS01025 (C6H62_01025) disA 217331..218395 (+) 1065 WP_021876916.1 DNA integrity scanning diadenylate cyclase DisA -
  C6H62_RS01030 (C6H62_01030) - 218475..218873 (-) 399 WP_079481043.1 DUF1573 domain-containing protein -
  C6H62_RS01035 (C6H62_01035) - 219173..220258 (+) 1086 WP_021876918.1 PIN/TRAM domain-containing protein -
  C6H62_RS01040 (C6H62_01040) ispD 220275..220949 (+) 675 WP_021876919.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50393.44 Da        Isoelectric Point: 7.9272

>NTDB_id=276156 C6H62_RS01020 WP_079481042.1 215947..217314(+) (radA) [Clostridium chauvoei strain SBP 07/09]
MAKIKSIFVCQECGYESLKWLGKCPDCNKWNTLVEEVKDTQKEQKNKVNTIKVLGSMPKNIQEIKSGEKERFNTGLKELN
RVLGGGLVKGSLTLISGDPGIGKSTLLLQTANAISKKYGKVLYVSGEESEEQIKIRGDRLGANDSNLYVLSETNLDLIEG
YIDELKPVFVIIDSIQTVYKEAITSAPGSVSQVKECSNAIMRIAKKKSIPLFIVAHVTKQGELAGPRVLEHMVDTVLYFE
GERTEEFRVLRTMKNRFGTTSEIGVFEMVEEGLKEIYDPSRIFLEDTNFNQEGSAVIGVMEGTRPILVEMQALVSETNMH
MASRTAVGIDNQRLRLILAVLEKKLKVPFFKYDVYVNVVGGLNLDGTTGDLGLALALLSSVKSTGFKLERTVIIGEVGLT
GEIRPISACDRLIKEAEKMGFKNAIIPNRNKDKVTSNEMNIIGVSNIREVISKIF

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=276156 C6H62_RS01020 WP_079481042.1 215947..217314(+) (radA) [Clostridium chauvoei strain SBP 07/09]
ATGGCTAAAATTAAATCCATATTTGTTTGTCAAGAATGTGGGTATGAATCTTTAAAATGGTTAGGTAAATGTCCTGATTG
TAATAAATGGAATACTCTTGTAGAAGAAGTTAAAGATACACAAAAAGAACAAAAAAATAAAGTTAATACAATAAAAGTTC
TAGGTAGTATGCCTAAAAATATACAGGAAATAAAATCTGGAGAAAAAGAAAGGTTTAATACAGGATTAAAAGAATTAAAT
CGAGTATTAGGTGGAGGTTTAGTGAAAGGATCTCTTACTTTAATTTCGGGAGATCCAGGAATAGGAAAGTCTACGTTACT
ACTTCAAACAGCAAATGCTATTTCTAAAAAGTATGGAAAGGTATTATATGTTTCAGGTGAAGAATCAGAAGAGCAAATAA
AGATAAGAGGGGATAGGTTAGGAGCCAATGATAGTAATTTATATGTTTTATCTGAAACTAATTTAGATTTAATAGAAGGA
TATATAGATGAATTAAAACCTGTATTTGTAATAATAGATTCTATACAAACGGTATATAAAGAAGCTATAACATCTGCACC
AGGTAGTGTTTCACAAGTAAAAGAATGTTCAAATGCAATTATGAGAATTGCTAAAAAGAAAAGTATCCCCTTATTTATAG
TGGCACATGTTACTAAACAAGGTGAGCTTGCAGGACCTAGAGTGTTAGAGCATATGGTAGATACTGTTTTATATTTTGAA
GGTGAAAGAACAGAAGAATTTAGAGTTTTAAGAACTATGAAAAATCGTTTTGGAACAACTAGTGAAATAGGAGTTTTTGA
AATGGTTGAAGAAGGTTTGAAGGAAATCTATGATCCATCTAGAATATTTTTAGAAGATACAAATTTTAATCAAGAAGGTT
CAGCAGTAATAGGTGTTATGGAAGGAACTAGACCAATACTTGTAGAAATGCAAGCTCTTGTTAGTGAAACTAATATGCAT
ATGGCAAGTAGAACAGCAGTAGGTATAGATAATCAAAGACTTAGATTAATACTAGCGGTATTAGAAAAGAAATTAAAGGT
TCCTTTCTTTAAATATGATGTATATGTAAATGTAGTTGGTGGATTAAACTTAGATGGAACTACTGGGGATTTAGGATTAG
CACTAGCACTATTATCTAGTGTTAAAAGTACTGGGTTTAAGTTGGAGAGAACTGTAATAATAGGAGAAGTTGGATTAACA
GGTGAAATAAGGCCAATATCAGCTTGTGATAGATTAATTAAAGAAGCAGAAAAAATGGGATTTAAGAATGCTATAATACC
AAATAGAAATAAAGATAAAGTAACTAGTAATGAAATGAACATTATTGGCGTAAGTAATATAAGAGAAGTAATTAGTAAGA
TATTCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-221)

Subunit ChlI of Mg-chelatase (ChlI)

(318-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U6ITY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.173

100

0.534
  radA Streptococcus pneumoniae Rx1

48.246

100

0.484
  radA Streptococcus pneumoniae D39

48.246

100

0.484
  radA Streptococcus pneumoniae R6

48.246

100

0.484
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.484
  radA Streptococcus mitis SK321

48.246

100

0.484
  radA Streptococcus mitis NCTC 12261

48.246

100

0.484

Multiple sequence alignment