Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6C13_RS18100 Genome accession   NZ_CP027255
Coordinates   3567611..3568240 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3562611..3573240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6C13_RS18075 (C6C13_18070) ycbZ 3563012..3564772 (-) 1761 WP_000156526.1 Lon protease family protein -
  C6C13_RS18080 (C6C13_18075) matP 3564958..3565410 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6C13_RS18085 (C6C13_18080) ompA 3565486..3566526 (-) 1041 WP_000750416.1 porin OmpA -
  C6C13_RS18095 (C6C13_18090) sulA 3566883..3567392 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6C13_RS18100 (C6C13_18095) sxy/tfoX 3567611..3568240 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6C13_RS18105 (C6C13_18100) yccS 3568203..3570365 (-) 2163 WP_000875044.1 YccS family putative transporter -
  C6C13_RS18110 (C6C13_18105) yccF 3570375..3570821 (-) 447 WP_001261231.1 YccF domain-containing protein -
  C6C13_RS18115 (C6C13_18110) helD 3570944..3572998 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=276128 C6C13_RS18100 WP_000839153.1 3567611..3568240(+) (sxy/tfoX) [Escherichia coli strain EC11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=276128 C6C13_RS18100 WP_000839153.1 3567611..3568240(+) (sxy/tfoX) [Escherichia coli strain EC11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment