Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   C6N19_RS03560 Genome accession   NZ_CP027250
Coordinates   488031..488915 (+) Length   294 a.a.
NCBI ID   WP_002119545.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP100004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483031..493915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N19_RS03535 (C6N19_03555) - 483345..484592 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  C6N19_RS03540 (C6N19_03560) wrbA 484953..485555 (+) 603 WP_005078299.1 NAD(P)H:quinone oxidoreductase -
  C6N19_RS03545 (C6N19_03565) xpt 485607..486182 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  C6N19_RS03550 (C6N19_03570) - 486255..486968 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  C6N19_RS03555 (C6N19_03575) - 487127..487798 (-) 672 WP_002119526.1 hypothetical protein -
  C6N19_RS03560 (C6N19_03580) tonB2 488031..488915 (+) 885 WP_002119545.1 energy transducer TonB Machinery gene
  C6N19_RS03565 (C6N19_03585) ybeY 488968..489444 (-) 477 WP_106405815.1 rRNA maturation RNase YbeY -
  C6N19_RS03570 (C6N19_03590) phoL 489454..490542 (-) 1089 WP_002119513.1 PhoH family protein -
  C6N19_RS03575 (C6N19_03595) miaB 490580..492031 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33615.18 Da        Isoelectric Point: 7.2531

>NTDB_id=276031 C6N19_RS03560 WP_002119545.1 488031..488915(+) (tonB2) [Acinetobacter pittii strain WCHAP100004]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGAGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=276031 C6N19_RS03560 WP_002119545.1 488031..488915(+) (tonB2) [Acinetobacter pittii strain WCHAP100004]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCTATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGTGCGGGAGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATCAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGCTTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATAGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.435

100

0.884

Multiple sequence alignment