Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D4K88_RS01780 Genome accession   NZ_CP032475
Coordinates   341991..343040 (-) Length   349 a.a.
NCBI ID   WP_139531934.1    Uniprot ID   -
Organism   Helicobacter pylori strain 381-F-EK9     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 336991..348040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K88_RS01755 rpsG 337267..337734 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  D4K88_RS01760 fusA 337746..339824 (+) 2079 WP_139531932.1 elongation factor G -
  D4K88_RS01765 - 340369..341298 (-) 930 WP_338400430.1 aldo/keto reductase -
  D4K88_RS01775 - 341585..341803 (+) 219 WP_000744170.1 hypothetical protein -
  D4K88_RS01780 waaF 341991..343040 (-) 1050 WP_139531934.1 lipopolysaccharide heptosyltransferase II Regulator
  D4K88_RS01785 hisS 343102..344430 (+) 1329 WP_139531935.1 histidine--tRNA ligase -
  D4K88_RS01790 asd 344417..345457 (+) 1041 WP_139531936.1 aspartate-semialdehyde dehydrogenase -
  D4K88_RS01795 - 345872..347155 (+) 1284 WP_139546087.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39546.43 Da        Isoelectric Point: 9.9464

>NTDB_id=276012 D4K88_RS01780 WP_139531934.1 341991..343040(-) (waaF) [Helicobacter pylori strain 381-F-EK9]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLFYATKTPIRIGFAQLFRSLFLSHAVTPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAKTAAVLLEKGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLEATHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=276012 D4K88_RS01780 WP_139531934.1 341991..343040(-) (waaF) [Helicobacter pylori strain 381-F-EK9]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGTTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAACTTTTTCGTTCTTTGTTTCTCAGCCATGCGGTAACTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCTTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCCAAAACCGCTGCTGTTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTGTTCAAT
AACGCTTACAATCTGTGCGGGAAAACCAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCACTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364