Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   C6N18_RS18420 Genome accession   NZ_CP027246
Coordinates   3601999..3602640 (-) Length   213 a.a.
NCBI ID   WP_000201229.1    Uniprot ID   A0A0J0ZM99
Organism   Acinetobacter baumannii strain WCHAB005078     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3596999..3607640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N18_RS18400 (C6N18_18420) aroK 3597928..3598497 (-) 570 WP_000643712.1 shikimate kinase AroK -
  C6N18_RS18405 (C6N18_18425) pilQ 3598509..3600661 (-) 2153 Protein_3395 type IV pilus secretin PilQ -
  C6N18_RS18410 (C6N18_18430) pilP 3600724..3601251 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  C6N18_RS18415 (C6N18_18435) pilO 3601262..3602002 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  C6N18_RS18420 (C6N18_18440) pilN 3601999..3602640 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  C6N18_RS18425 (C6N18_18445) pilM 3602640..3603698 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  C6N18_RS18430 (C6N18_18450) ponA 3603860..3606415 (+) 2556 WP_000736662.1 penicillin-binding protein PBP1a -
  C6N18_RS18435 (C6N18_18455) - 3606433..3607257 (-) 825 WP_001990541.1 putative RNA methyltransferase -
  C6N18_RS18440 (C6N18_18460) - 3607260..3607592 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24063.40 Da        Isoelectric Point: 5.3968

>NTDB_id=276007 C6N18_RS18420 WP_000201229.1 3601999..3602640(-) (pilN) [Acinetobacter baumannii strain WCHAB005078]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=276007 C6N18_RS18420 WP_000201229.1 3601999..3602640(-) (pilN) [Acinetobacter baumannii strain WCHAB005078]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGTCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.038

99.061

0.714

Multiple sequence alignment