Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   D4L09_RS06450 Genome accession   NZ_CP032474
Coordinates   1301132..1302478 (-) Length   448 a.a.
NCBI ID   WP_201737458.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-C-EK5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1296132..1307478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L09_RS06430 hopM 1296416..1298497 (+) 2082 WP_276567563.1 Hop family outer membrane protein HopM/HopN -
  D4L09_RS06435 - 1298709..1299542 (+) 834 WP_120831367.1 sulfite exporter TauE/SafE family protein -
  D4L09_RS06445 msrB 1299930..1301009 (-) 1080 WP_139546534.1 peptide-methionine (R)-S-oxide reductase MsrB -
  D4L09_RS06450 radA/sms 1301132..1302478 (-) 1347 WP_201737458.1 DNA repair protein RadA Machinery gene
  D4L09_RS06455 - 1302590..1302823 (-) 234 WP_139542359.1 ribbon-helix-helix domain-containing protein -
  D4L09_RS06460 - 1302981..1303961 (-) 981 WP_128065802.1 iron-sulfur cluster assembly scaffold protein -
  D4L09_RS06465 - 1303983..1305146 (-) 1164 WP_001921715.1 NifS family cysteine desulfurase -
  D4L09_RS06470 - 1305320..1305781 (-) 462 WP_201737459.1 helix-turn-helix domain-containing protein -
  D4L09_RS06475 - 1305847..1306477 (+) 631 Protein_1237 YbhB/YbcL family Raf kinase inhibitor-like protein -
  D4L09_RS06480 - 1306545..1307396 (-) 852 WP_201737522.1 beta-1,4-N-acetylgalactosamyltransferase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49379.30 Da        Isoelectric Point: 7.8021

>NTDB_id=275992 D4L09_RS06450 WP_201737458.1 1301132..1302478(-) (radA/sms) [Helicobacter pylori strain 476-C-EK5]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQAQKEVLNTLKNPLPQAQKSVSIAAIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVGAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=275992 D4L09_RS06450 WP_201737458.1 1301132..1302478(-) (radA/sms) [Helicobacter pylori strain 476-C-EK5]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGTGGTTTTACAAGCCCTAAGTGGTTAGGCAAGTGCGTTCAATG
CAACGCATGGGAGAGTTTTATAGAATTGAACCAAGCTCAAAAGGAAGTTTTAAACACGCTTAAAAATCCGCTCCCACAAG
CGCAAAAAAGCGTTTCTATCGCTGCAATTGAGCATGAAGAAGTCATTAAGTTTTCTTCCACTCAAAGCGAATTGGATATT
GTTTTAGGTGGGGGGATCGCTAAAGGGGGGTTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGTCAGATTAAAA
TGCGCGCCACTAGGTTGGATTGTATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATTGAGAGCGAAAATTATTTTGCGTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCGCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTAGCCAAAACAAGAGATATTGCTATTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGGGTGCTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAGGGC
GATCCCAGTAGGGAACTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGGGCGCTAAAGAAGCTTCAAGCTTGTTTTTTTCCAAAGAAGAGCCTATGGAGGGGAGCGCGA
TTACCATCACTTTAGAAGGCTCAAGAGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCGCCC
AAACGATTAGCGAACGGGTTTGACACCAACCGCCTTAACATGCTTATTGCTTTGTTAGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTTATTAATGTGAGCGGAGGCATTAAGATCAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACCGCCTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCTAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAGTCAAAAAACCTCTATAAAATGCTATGAAGCCAATGCGGTAGGCAAGATTGTTGAATGGATGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

AAA domain (AAA_25)

(66-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.073

95.313

0.449
  radA Streptococcus pneumoniae Rx1

46.479

95.089

0.442
  radA Streptococcus pneumoniae D39

46.479

95.089

0.442
  radA Streptococcus pneumoniae R6

46.479

95.089

0.442
  radA Streptococcus pneumoniae TIGR4

46.479

95.089

0.442
  radA Streptococcus mitis SK321

46.479

95.089

0.442
  radA Streptococcus mitis NCTC 12261

46.244

95.089

0.44

Multiple sequence alignment