Detailed information NTG0275989

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: C6N18_RS09015
• Genome accession: NZ_CP027246
• Coordinates: 1695810..1696511 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain WCHAB005078
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1690810..1701511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6N18_RS08980 (C6N18_08975)	kdsB	1691333..1692094 (+)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
C6N18_RS08985 (C6N18_08980)	-	1692106..1693086 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
C6N18_RS08990 (C6N18_08985)	-	1693098..1693439 (+)	342	WP_001183027.1	PilZ domain-containing protein	-
C6N18_RS08995 (C6N18_08990)	-	1693457..1694230 (+)	774	WP_000497300.1	TatD family hydrolase	-
C6N18_RS09000 (C6N18_08995)	-	1694268..1694876 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
C6N18_RS09005 (C6N18_09000)	-	1694886..1695440 (+)	555	WP_000841373.1	type II secretion system protein	-
C6N18_RS09010 (C6N18_09005)	xcpV	1695430..1695810 (+)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
C6N18_RS09015 (C6N18_09010)	xcpW	1695810..1696511 (+)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
C6N18_RS09020 (C6N18_09015)	gspK	1696511..1697470 (+)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
C6N18_RS09025 (C6N18_09020)	-	1697700..1698296 (+)	597	WP_000908449.1	6-pyruvoyl trahydropterin synthase family protein	-
C6N18_RS09030 (C6N18_09025)	ung	1698347..1699060 (+)	714	WP_001177527.1	uracil-DNA glycosylase	-
C6N18_RS09035 (C6N18_09030)	-	1699057..1700181 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
C6N18_RS09040 (C6N18_09035)	tadA	1700188..1700691 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
C6N18_RS09045 (C6N18_09040)	-	1700761..1701204 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=275989 C6N18_RS09015 WP_000594579.1 1695810..1696511(+) (xcpW) [Acinetobacter baumannii strain WCHAB005078]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=275989 C6N18_RS09015 WP_000594579.1 1695810..1696511(+) (xcpW) [Acinetobacter baumannii strain WCHAB005078]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983