Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4L09_RS04335 Genome accession   NZ_CP032474
Coordinates   875716..877236 (-) Length   506 a.a.
NCBI ID   WP_139546451.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-C-EK5     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 870716..882236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L09_RS08265 - 872361..872507 (-) 147 WP_236635938.1 hypothetical protein -
  D4L09_RS08480 - 872508..872576 (-) 69 Protein_834 restriction endonuclease subunit S -
  D4L09_RS04325 - 872555..873586 (-) 1032 WP_236635939.1 restriction endonuclease subunit S -
  D4L09_RS04330 - 873631..875691 (-) 2061 WP_139546450.1 heavy metal translocating P-type ATPase -
  D4L09_RS04335 comM 875716..877236 (-) 1521 WP_139546451.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4L09_RS04340 def 877242..877766 (-) 525 WP_139548951.1 peptide deformylase -
  D4L09_RS04345 clpP 877771..878358 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4L09_RS04350 tig 878379..879734 (-) 1356 WP_139546453.1 trigger factor -
  D4L09_RS04355 - 879846..880678 (-) 833 Protein_841 outer membrane protein -
  D4L09_RS04360 hpaA 880711..881493 (-) 783 WP_139548952.1 flagellar sheath lipoprotein HpaA -
  D4L09_RS04365 moaC 881612..882088 (-) 477 WP_139546455.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57239.23 Da        Isoelectric Point: 8.2333

>NTDB_id=275983 D4L09_RS04335 WP_139546451.1 875716..877236(-) (comM) [Helicobacter pylori strain 476-C-EK5]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=275983 D4L09_RS04335 WP_139546451.1 875716..877236(-) (comM) [Helicobacter pylori strain 476-C-EK5]
ATGATCAACACGATATTTTGCGCGACCATGCAAAGAGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTTACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAATTCTATCCAAGAAGCCAAGCAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTGAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAATTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAA
TCATTGCGCCTAAGGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAATCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCATTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAATCCCCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCCGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTACCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTGAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGACAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCGACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAGTTGGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAGGAGCAGATCGAACGATTTTGCCCCTTAAATTTTGAAG
CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTCAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.826

100

0.978
  comM Acinetobacter baylyi ADP1

36.399

100

0.368

Multiple sequence alignment