Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C3V42_RS06010 Genome accession   NZ_CP027235
Coordinates   1242172..1243125 (+) Length   317 a.a.
NCBI ID   WP_164994249.1    Uniprot ID   -
Organism   Haemophilus sp. oral taxon 036 strain F0629     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1237172..1248125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V42_RS05990 (C3V42_05995) grcA 1238271..1238654 (-) 384 WP_005628746.1 autonomous glycyl radical cofactor GrcA -
  C3V42_RS05995 (C3V42_06000) ung 1238922..1239581 (+) 660 WP_048952815.1 uracil-DNA glycosylase -
  C3V42_RS06000 (C3V42_06005) priC 1239596..1240174 (-) 579 WP_106013967.1 primosomal replication protein PriC -
  C3V42_RS06005 (C3V42_06010) - 1240204..1241556 (-) 1353 WP_106013968.1 Na+/H+ antiporter family protein -
  C3V42_RS06010 (C3V42_06015) ceuB 1242172..1243125 (+) 954 WP_164994249.1 ABC transporter permease Machinery gene
  C3V42_RS06015 (C3V42_06020) - 1243118..1244077 (+) 960 WP_106013970.1 iron chelate uptake ABC transporter family permease subunit -
  C3V42_RS06020 (C3V42_06025) - 1244068..1244829 (+) 762 WP_106013971.1 ATP-binding cassette domain-containing protein -
  C3V42_RS06025 (C3V42_06030) - 1244840..1245748 (+) 909 WP_106013972.1 siderophore ABC transporter substrate-binding protein -
  C3V42_RS06030 (C3V42_06035) - 1245861..1246676 (+) 816 WP_106014320.1 alpha/beta hydrolase-fold protein -
  C3V42_RS06035 (C3V42_06040) - 1246745..1247032 (-) 288 WP_106013973.1 YfcZ/YiiS family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35244.39 Da        Isoelectric Point: 9.9172

>NTDB_id=275952 C3V42_RS06010 WP_164994249.1 1242172..1243125(+) (ceuB) [Haemophilus sp. oral taxon 036 strain F0629]
MFKRRYWIFLLILLSVISLFLGVSSVTMRGLFNLEDSQWQIFLDSRVPRLVSILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILLAILFFPGASMFLKTVIAVLVSFIGSLLFMSILSRLKFKDTIFVPLVGMMFGNVISSITAFIAYQQDL
LQNLSGWLQGDFSLVMSGRYELLYFSLPMLIISYLFAQRFSIVGMGKDFATNLGLNYNQVLYIGLLIVSTVSSIIIVSVG
VIPFLGLIVPNLVTLYLGDNLKKILSHTALLGAVFVLFCDILGRCLIYPYEISINAVVGVMGSGIFLYFLLKRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=275952 C3V42_RS06010 WP_164994249.1 1242172..1243125(+) (ceuB) [Haemophilus sp. oral taxon 036 strain F0629]
ATGTTTAAACGGCGATATTGGATTTTTCTGCTTATTTTGCTTTCGGTTATTTCACTTTTTCTTGGGGTAAGTTCCGTCAC
TATGAGGGGCTTATTCAATTTGGAAGATAGTCAATGGCAAATATTTCTAGATAGTCGAGTGCCTCGTTTAGTAAGTATTT
TGATTGCTGGTGCTTCTTTAAGTATTTGTGGGTTGGTGATGCAGCAATTAAGCAGAAACCGTTTCGTTTCTCCCACAACT
GCAGGCACAATGGATAGTGCGCGTCTTGGCATTTTATTGGCCATTCTCTTTTTTCCAGGTGCATCAATGTTTTTAAAAAC
AGTTATTGCTGTGCTTGTTTCTTTTATTGGATCGCTATTATTTATGAGCATTCTTTCCCGTTTAAAGTTTAAAGATACTA
TTTTTGTGCCATTGGTGGGAATGATGTTTGGCAATGTGATCAGTTCAATCACCGCATTTATTGCATATCAACAAGATTTA
TTGCAAAACCTTTCTGGTTGGCTTCAAGGGGATTTTTCATTAGTGATGAGCGGGCGCTATGAATTGCTTTATTTTAGCCT
GCCGATGCTGATTATTTCTTATTTATTTGCACAGCGTTTTTCGATTGTAGGAATGGGAAAAGATTTCGCTACTAATCTTG
GGCTAAATTATAACCAAGTGCTTTATATAGGTTTGCTTATTGTATCGACAGTTTCATCGATTATTATTGTTTCTGTTGGG
GTAATTCCTTTTCTGGGTCTTATCGTTCCAAATTTAGTGACTCTATATTTAGGTGATAATCTCAAAAAAATTCTTTCTCA
CACCGCACTTTTAGGTGCCGTTTTTGTATTGTTTTGCGATATTTTGGGGCGTTGTTTGATTTATCCTTATGAAATTTCTA
TTAATGCAGTAGTTGGTGTGATGGGAAGCGGTATTTTCTTGTATTTTTTATTGAAAAGGTACCGTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

98.738

0.536

Multiple sequence alignment