Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4L01_RS04490 Genome accession   NZ_CP032473
Coordinates   920499..922019 (-) Length   506 a.a.
NCBI ID   WP_139542061.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-A2-EK2     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 915499..927019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L01_RS04480 - 917070..918370 (-) 1301 Protein_875 restriction endonuclease subunit S -
  D4L01_RS04485 - 918414..920474 (-) 2061 WP_139542060.1 heavy metal translocating P-type ATPase -
  D4L01_RS04490 comM 920499..922019 (-) 1521 WP_139542061.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4L01_RS04495 def 922025..922549 (-) 525 WP_139542062.1 peptide deformylase -
  D4L01_RS04500 clpP 922554..923141 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4L01_RS04505 tig 923162..924517 (-) 1356 WP_139542063.1 trigger factor -
  D4L01_RS04510 - 924629..925465 (-) 837 WP_139542064.1 outer membrane protein -
  D4L01_RS04515 hpaA 925494..926276 (-) 783 WP_139542065.1 flagellar sheath lipoprotein HpaA -
  D4L01_RS04520 moaC 926389..926865 (-) 477 WP_139542067.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57124.19 Da        Isoelectric Point: 8.6897

>NTDB_id=275944 D4L01_RS04490 WP_139542061.1 920499..922019(-) (comM) [Helicobacter pylori strain 476-A2-EK2]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVGHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=275944 D4L01_RS04490 WP_139542061.1 920499..922019(-) (comM) [Helicobacter pylori strain 476-A2-EK2]
ATGATCAACACGATATTTTGCGCGACCATGCAAAGAGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTTACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTAGCTAATAACTCTATCCAAGAAGCCAAGCAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCTATTAAGCGCCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGGGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCTTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATTTTGCCTCCATTAAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCTAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCCGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAACCTTTTTTAGACAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAGTTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGTGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTGGAGCAGGCGGTTGAAAGGTTTAATCTCTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

98.221

100

0.982
  comM Acinetobacter baylyi ADP1

36.204

100

0.366