Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | C3V42_RS03225 | Genome accession | NZ_CP027235 |
| Coordinates | 657606..658289 (+) | Length | 227 a.a. |
| NCBI ID | WP_106013617.1 | Uniprot ID | - |
| Organism | Haemophilus sp. oral taxon 036 strain F0629 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 652606..663289
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3V42_RS03200 (C3V42_03200) | gltX | 653665..655107 (+) | 1443 | WP_106013614.1 | glutamate--tRNA ligase | - |
| C3V42_RS03210 (C3V42_03210) | suhB | 655375..656178 (-) | 804 | WP_106013615.1 | inositol-1-monophosphatase | - |
| C3V42_RS03215 (C3V42_03215) | comN | 656378..656896 (+) | 519 | WP_106013616.1 | type II secretion system protein | Machinery gene |
| C3V42_RS03220 (C3V42_03220) | comO | 656890..657606 (+) | 717 | WP_106014306.1 | type II secretion system protein J | Machinery gene |
| C3V42_RS03225 (C3V42_03225) | comP | 657606..658289 (+) | 684 | WP_106013617.1 | DUF2572 family protein | Machinery gene |
| C3V42_RS03230 (C3V42_03230) | comQ | 658282..658569 (+) | 288 | WP_164994245.1 | DUF5374 domain-containing protein | Machinery gene |
| C3V42_RS03235 (C3V42_03235) | recC | 658617..661991 (+) | 3375 | WP_106013619.1 | exodeoxyribonuclease V subunit gamma | - |
| C3V42_RS03240 (C3V42_03240) | nrdR | 662054..662503 (+) | 450 | WP_005627362.1 | transcriptional regulator NrdR | - |
Sequence
Protein
Download Length: 227 a.a. Molecular weight: 25444.25 Da Isoelectric Point: 7.9320
>NTDB_id=275936 C3V42_RS03225 WP_106013617.1 657606..658289(+) (comP) [Haemophilus sp. oral taxon 036 strain F0629]
MATHKGIITLTILIFISGLLTVILLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTEEKKQTACLDLPLNNNESVKQISIT
LDGATDAIQYFIWCEKMSLFKKSPTKGDNQGALKDFIHIEKLTDFRPHFSSPPKMLNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVLTNGHLTLDGVTLAYGKSVVTALVQQYSKWQLAEKSWSDFNVPDE
MATHKGIITLTILIFISGLLTVILLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTEEKKQTACLDLPLNNNESVKQISIT
LDGATDAIQYFIWCEKMSLFKKSPTKGDNQGALKDFIHIEKLTDFRPHFSSPPKMLNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVLTNGHLTLDGVTLAYGKSVVTALVQQYSKWQLAEKSWSDFNVPDE
Nucleotide
Download Length: 684 bp
>NTDB_id=275936 C3V42_RS03225 WP_106013617.1 657606..658289(+) (comP) [Haemophilus sp. oral taxon 036 strain F0629]
ATGGCTACACACAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAGTCATTTAAGTTTTTTTCGTGCACAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACAGAGGAGAAAAAACAAACTGCCTGCCTTGATTTACCGTTAAATAATAATGAAAGTGTAAAGCAAATCAGCATCACG
CTTGATGGCGCCACAGATGCAATTCAATATTTTATTTGGTGTGAAAAAATGAGCCTATTTAAAAAATCGCCCACAAAAGG
CGATAATCAGGGTGCATTGAAAGATTTTATTCACATAGAAAAACTAACGGATTTTCGACCGCACTTTTCTTCCCCACCCA
AAATGTTAAACGCGAATAAAACACCTAAACTTTATTGGTTTTCAGATTCTCAAGCGGAAGTTGAAATTAATGGCACTGTG
TCTGCTGTATTAATTGCAGAGGGAGATTTAAAACTAACAGGCAAAGGACGGATTAGTGGCGCAGTACTCACCAATGGGCA
TTTAACTTTAGATGGGGTGACTTTAGCCTATGGAAAATCTGTCGTCACAGCCTTAGTGCAACAATATAGTAAGTGGCAAT
TGGCAGAAAAAAGTTGGAGTGATTTTAATGTTCCAGATGAATAA
ATGGCTACACACAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAGTCATTTAAGTTTTTTTCGTGCACAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACAGAGGAGAAAAAACAAACTGCCTGCCTTGATTTACCGTTAAATAATAATGAAAGTGTAAAGCAAATCAGCATCACG
CTTGATGGCGCCACAGATGCAATTCAATATTTTATTTGGTGTGAAAAAATGAGCCTATTTAAAAAATCGCCCACAAAAGG
CGATAATCAGGGTGCATTGAAAGATTTTATTCACATAGAAAAACTAACGGATTTTCGACCGCACTTTTCTTCCCCACCCA
AAATGTTAAACGCGAATAAAACACCTAAACTTTATTGGTTTTCAGATTCTCAAGCGGAAGTTGAAATTAATGGCACTGTG
TCTGCTGTATTAATTGCAGAGGGAGATTTAAAACTAACAGGCAAAGGACGGATTAGTGGCGCAGTACTCACCAATGGGCA
TTTAACTTTAGATGGGGTGACTTTAGCCTATGGAAAATCTGTCGTCACAGCCTTAGTGCAACAATATAGTAAGTGGCAAT
TGGCAGAAAAAAGTTGGAGTGATTTTAATGTTCCAGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Haemophilus influenzae Rd KW20 |
87.225 |
100 |
0.872 |