Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   C3V42_RS03220 Genome accession   NZ_CP027235
Coordinates   656890..657606 (+) Length   238 a.a.
NCBI ID   WP_106014306.1    Uniprot ID   -
Organism   Haemophilus sp. oral taxon 036 strain F0629     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 651890..662606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V42_RS03200 (C3V42_03200) gltX 653665..655107 (+) 1443 WP_106013614.1 glutamate--tRNA ligase -
  C3V42_RS03210 (C3V42_03210) suhB 655375..656178 (-) 804 WP_106013615.1 inositol-1-monophosphatase -
  C3V42_RS03215 (C3V42_03215) comN 656378..656896 (+) 519 WP_106013616.1 type II secretion system protein Machinery gene
  C3V42_RS03220 (C3V42_03220) comO 656890..657606 (+) 717 WP_106014306.1 type II secretion system protein J Machinery gene
  C3V42_RS03225 (C3V42_03225) comP 657606..658289 (+) 684 WP_106013617.1 DUF2572 family protein Machinery gene
  C3V42_RS03230 (C3V42_03230) comQ 658282..658569 (+) 288 WP_164994245.1 DUF5374 domain-containing protein Machinery gene
  C3V42_RS03235 (C3V42_03235) recC 658617..661991 (+) 3375 WP_106013619.1 exodeoxyribonuclease V subunit gamma -
  C3V42_RS03240 (C3V42_03240) nrdR 662054..662503 (+) 450 WP_005627362.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26756.90 Da        Isoelectric Point: 8.6994

>NTDB_id=275935 C3V42_RS03220 WP_106014306.1 656890..657606(+) (comO) [Haemophilus sp. oral taxon 036 strain F0629]
MMKTLLKGQTLLALMISLVLSSLLLLSISHFYVQIQTQNQQILLHLKLQAELQRTLQLIGKDLRRLGFRALNTKGTESNL
SLFELDEEGTAIFISQEDNAPLNSCVLFFYDLNKNGCIGKDSPKTCMKNGKNTSKNSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQSACNAGGGWTDLLDNNEYEVTSLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVSLWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=275935 C3V42_RS03220 WP_106014306.1 656890..657606(+) (comO) [Haemophilus sp. oral taxon 036 strain F0629]
ATCATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCTCTGGTGTTATCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATTCAAACTCAAAATCAACAGATATTATTGCATTTAAAACTACAAGCAGAATTACAAC
GAACATTACAGCTCATCGGTAAAGATCTTCGGCGATTGGGATTTAGAGCATTAAATACAAAAGGAACAGAAAGCAATTTA
TCTTTATTTGAATTAGATGAAGAAGGCACTGCTATTTTCATTAGTCAAGAAGATAATGCCCCACTTAATAGCTGTGTGTT
GTTCTTTTATGATTTAAATAAAAATGGATGTATTGGCAAAGATTCACCAAAAACCTGTATGAAAAATGGGAAAAATACAT
CCAAAAACAGTACAGAGGAATTATTCGGTTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCAACTAATTGCACAGCAGAAACTTGTAAACGTGCTTTTCAACAATCGGCTTGCAACGCTGGAGGCGGTTGGACTGA
TTTATTAGACAATAATGAATACGAAGTCACTAGCCTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAACATCAGTTATGAAACATCCCTTGTCGTTTCGCTCTGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

93.277

100

0.933

Multiple sequence alignment