Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   C3V42_RS01740 Genome accession   NZ_CP027235
Coordinates   362703..365069 (-) Length   788 a.a.
NCBI ID   WP_106013427.1    Uniprot ID   -
Organism   Haemophilus sp. oral taxon 036 strain F0629     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357703..370069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V42_RS01720 (C3V42_01720) kdsB 358882..359646 (-) 765 WP_065264533.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C3V42_RS01725 (C3V42_01725) - 359650..359823 (-) 174 WP_171898282.1 Trm112 family protein -
  C3V42_RS01730 (C3V42_01730) lpxK 359828..360826 (-) 999 WP_106013425.1 tetraacyldisaccharide 4'-kinase -
  C3V42_RS01735 (C3V42_01735) msbA 360899..362662 (-) 1764 WP_106013426.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  C3V42_RS01740 (C3V42_01740) rec2 362703..365069 (-) 2367 WP_106013427.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C3V42_RS01745 (C3V42_01745) dksA 365329..365766 (+) 438 WP_005627987.1 RNA polymerase-binding protein DksA -
  C3V42_RS01750 (C3V42_01750) pcnB 366015..367373 (+) 1359 WP_106014301.1 polynucleotide adenylyltransferase PcnB -
  C3V42_RS01755 (C3V42_01755) folK 367382..367864 (+) 483 WP_106013428.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  C3V42_RS01760 (C3V42_01760) tsaE 367940..368416 (+) 477 WP_005635434.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  C3V42_RS01765 (C3V42_01765) - 368420..369790 (+) 1371 WP_106013429.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89651.48 Da        Isoelectric Point: 10.0440

>NTDB_id=275923 C3V42_RS01740 WP_106013427.1 362703..365069(-) (rec2) [Haemophilus sp. oral taxon 036 strain F0629]
MKLNLITLVILLIVADLTLLFLPQSLLLPWLVALVIALVLIFLFIFLRRNFLVFLAFFVVSLGYTHHSALSLLQQAQSIT
AQKQVVTFKIQEILYQQDYQTLIATTTLADNLLGQRIFLNWKAKEVPQLSEVWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKNAVKIADISSLRAEKLQKVKKQTEGLSLQGLLIALAFGERAWLDKNTWSIYQQTNTAHLIAISGLHIGLAM
GIGFYLARVVQVFFSTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALIFVFFIQIMRRHYSPLQLFTLVVGFLLF
CDPLMPLSVSFWLSCGAVGCLIVWYRYVPFSVFQWKNRPFSSKVRWILSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LIAVPLYSFLLVPLILFAVFTNGAVFSWQLANKLAEGITWLISLFQGNWFSVSFNLALVLTALCCGMFMLIIWSIYREPK
VLSSIRQIKRARFFTLNLSKPLLKNDRIKVLRCSFGIMSLCFMILLFKQLSKPIWQVDTLDVGQGLATLIVKNGKGILYD
TGPAWQGGNMAELEILPYLHREGITLEKLILSHDDNDHAGGASTILKAYPNVEFITPSQKKYGENHRTFCTAGRHWDWQG
LHFQILSPYSIVERADNPHSCVTLVDDGKHRVLLTGDAETKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDIA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAISGQVRVNFFKDRLEIQQARTEFSPWYARVIGFSSE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=275923 C3V42_RS01740 WP_106013427.1 362703..365069(-) (rec2) [Haemophilus sp. oral taxon 036 strain F0629]
ATGAAATTAAACTTAATAACCTTAGTTATCTTGCTGATTGTTGCAGATTTAACGTTGTTATTTCTACCGCAGTCATTGCT
ACTGCCTTGGCTAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTTTTGCGTAGAAATTTCTTAGTTT
TTCTTGCTTTTTTTGTTGTTTCTCTCGGTTATACACATCATTCAGCGCTTAGCTTGTTACAACAAGCACAAAGTATTACC
GCTCAAAAACAAGTGGTGACTTTTAAGATCCAAGAAATTTTGTACCAACAGGATTATCAAACTCTCATTGCTACAACAAC
ATTGGCGGATAACTTACTAGGGCAACGAATTTTTTTAAATTGGAAAGCGAAAGAGGTACCTCAACTATCGGAAGTTTGGC
AAGCTGAAATTTCCTTACGTCCTCTTTCAGCGCGATTAAATTTTGGTGGATTTGATCGGCAACAATGGTATTTCTCAAAG
GGAATTACGGCTGTTGGAACCGTAAAAAATGCGGTGAAAATTGCTGATATTTCATCATTGCGCGCAGAAAAATTGCAAAA
AGTGAAAAAACAAACAGAAGGATTATCTCTACAAGGTTTATTGATTGCGTTAGCCTTTGGCGAACGGGCTTGGCTAGATA
AAAATACTTGGTCAATTTACCAACAAACGAATACTGCGCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTACTTGGCGCGTGTTGTACAAGTATTTTTTTCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTATTT
TCGTTTTCTTTATTCAAATAATGAGGCGACATTATTCGCCTCTCCAGCTTTTTACATTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCTCTTTCTGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGTTGTTTGATTGTCTGGTATCGTTA
TGTGCCTTTTTCAGTTTTTCAATGGAAAAATCGTCCCTTTTCATCAAAGGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACGCCTTTGCAACTTTTTTTATTTAATGGCTTATCGTTGAGCGGGTTTTTAGCCAAT
CTTATTGCCGTACCACTTTATAGTTTTTTGCTTGTTCCTTTGATTTTATTTGCTGTTTTTACCAACGGTGCGGTTTTTTC
TTGGCAACTTGCGAATAAGTTAGCCGAAGGAATTACTTGGTTAATTTCTCTTTTTCAAGGAAATTGGTTCAGTGTTTCAT
TTAATTTAGCGCTGGTTCTAACCGCACTTTGTTGTGGCATGTTTATGTTAATTATTTGGAGTATTTACCGAGAACCCAAG
GTTTTATCATCAATCAGGCAAATAAAACGGGCAAGATTTTTTACATTAAATCTCAGTAAACCTTTGCTAAAAAATGATCG
AATCAAGGTTTTGAGATGTTCTTTCGGCATTATGTCGCTATGTTTTATGATTTTGTTGTTCAAGCAACTAAGCAAGCCAA
TTTGGCAGGTAGATACTTTAGATGTGGGACAGGGCTTAGCTACGTTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACAGGCCCTGCATGGCAAGGAGGAAATATGGCTGAATTAGAAATTTTGCCTTATTTACATAGAGAAGGGATTACTTTGGA
AAAGTTGATTTTGAGCCACGACGATAACGATCATGCAGGTGGTGCTTCGACAATTTTAAAGGCGTATCCGAATGTGGAAT
TTATTACCCCTTCACAAAAAAAATATGGGGAAAATCACCGCACTTTTTGTACTGCTGGACGTCATTGGGATTGGCAAGGG
CTACATTTTCAAATACTTTCACCATATTCTATTGTGGAGCGAGCAGATAATCCCCATTCTTGTGTAACTTTAGTCGATGA
TGGAAAGCATCGAGTTTTGCTAACTGGCGATGCTGAAACAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGAAAAATTG
ATGTGTTACAAGTAGGACATCACGGTAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATATAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTACATCGTTATAAAAGTGC
GGTAGAAAATACCGCTATTTCAGGGCAAGTTCGGGTAAATTTTTTTAAAGATCGATTAGAAATCCAACAAGCACGCACAG
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTCTCGAGCGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-171)

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

89.34

100

0.893

Multiple sequence alignment