Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C3V43_RS07470 Genome accession   NZ_CP027234
Coordinates   1805270..1806637 (+) Length   455 a.a.
NCBI ID   WP_106069261.1    Uniprot ID   -
Organism   Bacteroides heparinolyticus strain F0111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1800270..1811637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V43_RS07450 (C3V43_07450) - 1801016..1802053 (+) 1038 WP_106069257.1 asparaginase -
  C3V43_RS07455 (C3V43_07455) - 1802421..1802879 (+) 459 WP_106069258.1 DUF4377 domain-containing protein -
  C3V43_RS07460 (C3V43_07460) - 1802902..1803600 (-) 699 WP_106069259.1 DUF4276 family protein -
  C3V43_RS07465 (C3V43_07465) - 1803597..1804721 (-) 1125 WP_106069260.1 AAA family ATPase -
  C3V43_RS07470 (C3V43_07470) radA 1805270..1806637 (+) 1368 WP_106069261.1 DNA repair protein RadA Machinery gene
  C3V43_RS07475 (C3V43_07475) - 1806666..1808480 (+) 1815 WP_106069262.1 hypothetical protein -
  C3V43_RS07480 (C3V43_07480) - 1808477..1809160 (+) 684 WP_106069263.1 hypothetical protein -
  C3V43_RS07485 (C3V43_07485) - 1809227..1810843 (+) 1617 WP_106069264.1 NAD(P)/FAD-dependent oxidoreductase -
  C3V43_RS07490 (C3V43_07490) - 1810897..1811508 (+) 612 WP_106069265.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50015.64 Da        Isoelectric Point: 6.6092

>NTDB_id=275918 C3V43_RS07470 WP_106069261.1 1805270..1806637(+) (radA) [Bacteroides heparinolyticus strain F0111]
MTKEKRVYVCSNCGQESPKWVGKCPSCGEWNTYVEEVIRKEAVSKRPVSGIETAKAKPVTLDDITADDEPRIDMHDDELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLRIPEKRILYVSGEESARQLKLRADRLTGSSSDCLIVCETSLEQIYVHI
KNTRPDIVIIDSIQTISTESLESSPGSIAQVRECSASILRFAKETHTAVVLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQEHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEQGVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKQFILPKYNMQGINTKKIRIELIPVRKVEEAFRTLFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=275918 C3V43_RS07470 WP_106069261.1 1805270..1806637(+) (radA) [Bacteroides heparinolyticus strain F0111]
ATGACGAAAGAAAAGAGAGTATATGTATGCAGCAATTGCGGTCAGGAGTCTCCCAAATGGGTAGGAAAATGTCCTTCGTG
CGGAGAATGGAACACGTATGTGGAAGAGGTGATACGGAAAGAGGCAGTGAGCAAACGTCCGGTATCGGGCATAGAGACCG
CCAAAGCAAAGCCCGTGACCTTGGACGACATCACGGCCGATGACGAGCCGCGCATAGACATGCACGACGACGAGCTGAAC
CGTGTGCTGGGCGGCGGTCTGGTGCAAGGCTCATTGGTGCTGATTGGCGGCGAGCCGGGCATCGGCAAATCCACATTGGT
GTTGCAAACCGTGCTCCGCATTCCGGAGAAACGAATACTCTACGTCTCCGGCGAAGAGAGCGCCCGCCAACTGAAACTCC
GTGCCGACAGGTTGACAGGCAGCTCCTCCGACTGCCTCATCGTGTGCGAGACTTCGCTGGAGCAGATTTATGTCCACATC
AAAAACACGCGCCCGGACATTGTCATCATCGACTCCATACAGACCATCTCTACCGAAAGCCTCGAATCATCACCGGGAAG
CATCGCCCAAGTAAGGGAATGCTCCGCCTCCATCCTTCGTTTTGCCAAAGAGACCCACACGGCGGTCGTCCTCATCGGAC
ATATAAATAAGGAGGGCAGCATAGCCGGCCCCAAGGTGCTGGAACATATTGTAGACACCGTGCTTCAGTTTGAAGGCGAC
CAACATTATATGTACCGCATCCTGCGGAGCATCAAGAACCGCTTCGGAAGCACGGCCGAGCTGGGCATCTACGAGATGAG
GCAAGACGGACTGCGGCAAGTGAGCAATCCCTCCGAACTGCTGTTGAGCCAAGAACACGAGGGAATGAGCGGCGTGGCCA
TCGCCTCGGCCATAGAGGGCGTAAGACCCTTCCTCATCGAGACGCAGGCGTTGGTCAGCAGTGCCGTGTATGGCAATCCG
CAACGCTCGGCCACGGGATTCGACATCCGCCGGATGAACATGCTGCTGGCCGTGCTCGAAAAGCGCGTGGGATTCAAGCT
GGCACAGAAAGACGTCTTCCTGAATATTGCAGGCGGGCTGAAGGTGAACGACCCCGCCATCGACTTAGCCGTAATCAGCG
CCATCCTCTCCAGCAACATGGACGCCGCCATCGAACAAGGCGTCTGCATGGCGGGCGAAATCGGGCTGTCGGGCGAAATC
CGTCCGGTGAACCGCATCGAACAGCGCATCGGCGAGGCGGAGAAGCTGGGCTTCAAGCAATTTATATTGCCAAAGTACAA
CATGCAGGGCATCAACACCAAGAAGATAAGAATAGAGCTGATACCGGTGCGGAAAGTGGAAGAAGCCTTCCGCACGCTGT
TCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

AAA domain (AAA_25)

(72-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.327

100

0.508
  radA Streptococcus mitis SK321

47.692

100

0.477
  radA Streptococcus mitis NCTC 12261

47.692

100

0.477
  radA Streptococcus pneumoniae Rx1

47.692

100

0.477
  radA Streptococcus pneumoniae D39

47.692

100

0.477
  radA Streptococcus pneumoniae R6

47.692

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.692

100

0.477

Multiple sequence alignment