Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C4H11_RS07105 Genome accession   NZ_CP027231
Coordinates   1694091..1695458 (-) Length   455 a.a.
NCBI ID   WP_106041035.1    Uniprot ID   -
Organism   Bacteroides zoogleoformans strain ATCC 33285     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1689091..1700458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4H11_RS07090 (C4H11_07110) - 1691309..1691851 (+) 543 WP_106041032.1 hypothetical protein -
  C4H11_RS07095 (C4H11_07115) - 1692154..1692420 (+) 267 WP_129588290.1 hypothetical protein -
  C4H11_RS07100 (C4H11_07120) - 1692455..1694065 (-) 1611 WP_106041034.1 NAD(P)/FAD-dependent oxidoreductase -
  C4H11_RS07105 (C4H11_07125) radA 1694091..1695458 (-) 1368 WP_106041035.1 DNA repair protein RadA Machinery gene
  C4H11_RS07110 (C4H11_07130) - 1695533..1695850 (-) 318 Protein_1365 DUF234 domain-containing protein -
  C4H11_RS07115 (C4H11_07135) - 1696046..1696504 (-) 459 WP_106041036.1 DUF4377 domain-containing protein -
  C4H11_RS07120 (C4H11_07140) - 1696892..1697929 (-) 1038 WP_106041037.1 asparaginase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50127.80 Da        Isoelectric Point: 6.6913

>NTDB_id=275903 C4H11_RS07105 WP_106041035.1 1694091..1695458(-) (radA) [Bacteroides zoogleoformans strain ATCC 33285]
MTKEKRVYVCSHCGQDSPKWVGKCPSCGEWNTYVEEVIRKEPVSKRPLSGIETAKAKPVTLDDITADEEPRIDLHDDELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVLQTILRIPDKRILYVSGEESARQLKLRADRLTANSADCLIVCETSLEQIYVHI
KNTRPDLVIIDSIQTISTESLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLTQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEQGVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKQFILPKYNMQGINTRKIRIELIPVRKVEEAFRTLFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=275903 C4H11_RS07105 WP_106041035.1 1694091..1695458(-) (radA) [Bacteroides zoogleoformans strain ATCC 33285]
ATGACGAAAGAAAAGAGAGTATATGTATGCAGCCACTGCGGACAGGATTCGCCCAAGTGGGTAGGAAAATGCCCCTCGTG
CGGAGAGTGGAACACGTATGTGGAAGAGGTGATACGCAAAGAGCCGGTAAGCAAACGTCCCCTCTCGGGCATAGAGACCG
CCAAGGCAAAGCCCGTGACGCTGGACGACATCACGGCCGATGAAGAGCCGCGCATAGACCTGCACGACGACGAACTGAAC
CGCGTGTTGGGCGGCGGCCTGGTGCAAGGCTCATTGGTGCTGATTGGCGGCGAACCGGGCATCGGCAAATCCACGCTCGT
GCTGCAAACCATCCTCCGCATTCCGGACAAGCGCATCCTCTACGTCTCGGGCGAAGAGAGTGCCCGGCAGCTGAAACTCC
GTGCCGACCGGCTGACCGCTAACTCCGCCGACTGCCTCATCGTGTGCGAGACGTCGCTGGAGCAGATTTACGTCCACATC
AAGAACACACGCCCGGACCTCGTCATCATCGACTCCATACAGACCATCTCCACCGAATCTCTCGAATCATCGCCGGGAAG
CATCGCCCAAGTGCGGGAGTGCTCCGCCTCCATCCTGCGGTTTGCCAAAGAAACGCATACAGCGGTCATCCTCATCGGGC
ACATCAACAAAGAGGGCAGCATAGCCGGCCCCAAGGTGCTGGAACATATCGTGGACACCGTGCTTCAGTTCGAGGGCGAC
CAACACTATATGTACCGCATTCTGCGAAGCATCAAGAACCGCTTCGGCAGCACGGCGGAACTGGGCATCTACGAGATGCG
GCAGGACGGCCTGCGGCAGGTGAGCAACCCGTCCGAGCTGCTGCTGACCCAAGACCACGAGGGAATGAGCGGCGTGGCCA
TCGCTTCGGCCATAGAGGGTGTCAGGCCCTTCCTCATCGAGACGCAGGCGTTGGTCAGCAGTGCTGTGTATGGCAATCCG
CAACGCTCGGCCACGGGATTCGACATCCGCCGCATGAACATGCTGCTGGCCGTGCTCGAGAAGCGCGTGGGATTCAAGCT
GGCACAGAAAGACGTCTTCCTGAACATTGCAGGCGGACTGAAGGTGAACGACCCCGCCATCGACCTCGCCGTCATCAGCG
CCATCCTCTCCAGCAACATGGACGCCGCCATCGAACAAGGCGTCTGCATGGCGGGCGAAATCGGGCTGTCGGGCGAAATC
CGTCCGGTGAACCGCATCGAGCAGCGTATCGGCGAGGCGGAGAAGCTGGGCTTCAAGCAATTCATTCTGCCCAAATACAA
CATGCAGGGCATCAACACCCGGAAGATAAGAATAGAGCTGATACCGGTGCGGAAAGTGGAAGAGGCTTTCCGCACGCTGT
TCGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.545

100

0.51
  radA Streptococcus mitis SK321

47.588

100

0.477
  radA Streptococcus pneumoniae Rx1

47.588

100

0.477
  radA Streptococcus pneumoniae D39

47.588

100

0.477
  radA Streptococcus pneumoniae R6

47.588

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.588

100

0.477
  radA Streptococcus mitis NCTC 12261

47.588

100

0.477

Multiple sequence alignment