Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C5523_RS17810 Genome accession   NZ_CP027225
Coordinates   3640502..3641122 (-) Length   206 a.a.
NCBI ID   WP_039078588.1    Uniprot ID   A0A348DGQ5
Organism   Phytobacter sp. SCO41     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3635502..3646122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5523_RS17795 helD 3635735..3637789 (-) 2055 WP_108701677.1 DNA helicase IV -
  C5523_RS17800 - 3637913..3638359 (+) 447 WP_039078590.1 YccF domain-containing protein -
  C5523_RS17805 yccS 3638376..3640505 (+) 2130 WP_108701678.1 YccS family putative transporter -
  C5523_RS17810 sxy/tfoX 3640502..3641122 (-) 621 WP_039078588.1 TfoX/Sxy family DNA transformation protein Regulator
  C5523_RS17815 sulA 3641341..3641841 (+) 501 WP_039078587.1 SOS-induced cell division inhibitor SulA -
  C5523_RS17825 ompA 3642208..3643266 (+) 1059 WP_071194674.1 porin OmpA -
  C5523_RS17830 matP 3643339..3643791 (-) 453 WP_039078585.1 macrodomain Ter protein MatP -
  C5523_RS17835 - 3643975..3645735 (+) 1761 WP_108701679.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23777.52 Da        Isoelectric Point: 9.8088

>NTDB_id=275870 C5523_RS17810 WP_039078588.1 3640502..3641122(-) (sxy/tfoX) [Phytobacter sp. SCO41]
MKNISYQRIYQSREYLAPLGKIRFRAHFGGYSLSIDNTVFAMISEGELYLRACEESAQYRVTRSSPLLTIQKRGRAVSLN
YYFVDEHLWRDLPTLLRLSSQSLAAAREEKAARDTPHRLKDLPNISFQLEMMLFDAGIPDERMLRHLGAKACWLRLKALN
KHMGIKVLLGLEGAIIGLHEAALPALRRQELIDWYHEVGQKKNQDH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=275870 C5523_RS17810 WP_039078588.1 3640502..3641122(-) (sxy/tfoX) [Phytobacter sp. SCO41]
ATGAAAAACATATCCTATCAAAGGATCTATCAGTCCCGGGAATACCTCGCACCTTTGGGGAAAATTCGCTTTCGCGCGCA
TTTTGGTGGCTACAGCTTATCGATAGACAACACCGTGTTTGCGATGATTTCAGAAGGAGAGTTATACCTGCGTGCCTGTG
AGGAGAGCGCGCAATATCGGGTAACGCGAAGTTCACCTCTTCTGACAATCCAGAAGCGTGGCCGCGCTGTTTCACTTAAC
TACTACTTTGTTGATGAGCATCTCTGGCGTGACTTGCCAACATTGTTGCGGCTTTCATCACAATCGCTCGCGGCGGCCCG
GGAGGAAAAAGCGGCGCGAGATACGCCTCATCGCCTTAAGGACCTTCCAAACATAAGCTTTCAACTTGAGATGATGCTTT
TTGACGCAGGTATACCAGACGAACGTATGCTGCGGCATCTGGGCGCCAAAGCGTGTTGGTTGCGTTTGAAGGCGTTGAAC
AAACACATGGGCATCAAGGTGCTGCTGGGTCTGGAAGGCGCGATCATTGGGCTGCATGAAGCCGCGCTCCCGGCGTTGAG
ACGCCAGGAGTTAATCGACTGGTACCACGAGGTGGGTCAGAAAAAAAACCAGGATCATTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A348DGQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.406

98.058

0.583

Multiple sequence alignment