Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   TFGB2_RS12520 Genome accession   NZ_CP032429
Coordinates   2110174..2110317 (-) Length   47 a.a.
NCBI ID   WP_003691943.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TFG-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2105174..2115317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TFGB2_RS12500 (TFGB2_02201) pilA 2106500..2107753 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  TFGB2_RS13520 - 2107830..2108003 (-) 174 WP_169300794.1 hypothetical protein -
  TFGB2_RS12505 (TFGB2_02202) - 2108017..2108696 (-) 680 Protein_2141 opacity family porin -
  TFGB2_RS12515 (TFGB2_02203) pilE 2109296..2109805 (-) 510 WP_134797946.1 pilin Machinery gene
  TFGB2_RS12520 pilE 2110174..2110317 (-) 144 WP_003691943.1 hypothetical protein Machinery gene
  TFGB2_RS14195 - 2110620..2110723 (-) 104 Protein_2144 pilin -
  TFGB2_RS12535 (TFGB2_02204) pilE 2110861..2111292 (-) 432 WP_050170900.1 pilin Machinery gene
  TFGB2_RS12540 (TFGB2_02205) lpxC 2111399..2112322 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  TFGB2_RS12545 (TFGB2_02206) - 2112683..2112913 (-) 231 Protein_2147 hypothetical protein -
  TFGB2_RS12550 (TFGB2_02207) - 2112910..2113653 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  TFGB2_RS12555 (TFGB2_02208) gmhB 2113683..2114246 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5034.54 Da        Isoelectric Point: 7.2428

>NTDB_id=275846 TFGB2_RS12520 WP_003691943.1 2110174..2110317(-) (pilE) [Neisseria gonorrhoeae strain TFG-B2]
MTGFNDAAGNDKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=275846 TFGB2_RS12520 WP_003691943.1 2110174..2110317(-) (pilE) [Neisseria gonorrhoeae strain TFG-B2]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447

Multiple sequence alignment