Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6H73_RS18160 Genome accession   NZ_CP027219
Coordinates   3249989..3250618 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2015C-3163     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3244989..3255618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H73_RS18145 helD 3245231..3247285 (-) 2055 WP_000420533.1 DNA helicase IV -
  C6H73_RS18150 yccF 3247408..3247854 (+) 447 WP_001261231.1 YccF domain-containing protein -
  C6H73_RS18155 yccS 3247864..3250026 (+) 2163 WP_000875044.1 YccS family putative transporter -
  C6H73_RS18160 sxy/tfoX 3249989..3250618 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6H73_RS18165 sulA 3250837..3251346 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6H73_RS18175 ompA 3251703..3252743 (+) 1041 WP_000750416.1 porin OmpA -
  C6H73_RS18180 matP 3252819..3253271 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6H73_RS18185 ycbZ 3253457..3255217 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=275825 C6H73_RS18160 WP_000839153.1 3249989..3250618(-) (sxy/tfoX) [Escherichia coli strain 2015C-3163]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=275825 C6H73_RS18160 WP_000839153.1 3249989..3250618(-) (sxy/tfoX) [Escherichia coli strain 2015C-3163]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment