Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C2E19_RS25595 Genome accession   NZ_CP027218
Coordinates   5575950..5577317 (-) Length   455 a.a.
NCBI ID   WP_129395605.1    Uniprot ID   A0A481QZU9
Organism   Pseudomonas sp. DTU12.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5570950..5582317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E19_RS25570 (C2E19_25615) - 5571077..5571787 (+) 711 WP_129395601.1 GntR family transcriptional regulator -
  C2E19_RS25575 (C2E19_25620) yjiA 5571904..5572875 (-) 972 WP_129395602.1 GTPase -
  C2E19_RS25580 (C2E19_25625) - 5573041..5573238 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  C2E19_RS25585 (C2E19_25630) - 5573254..5575320 (-) 2067 WP_129395603.1 carbon starvation CstA family protein -
  C2E19_RS25590 (C2E19_25635) - 5575481..5575849 (+) 369 WP_129395604.1 PilZ domain-containing protein -
  C2E19_RS25595 (C2E19_25640) radA 5575950..5577317 (-) 1368 WP_129395605.1 DNA repair protein RadA Machinery gene
  C2E19_RS25600 (C2E19_25645) - 5577364..5577897 (-) 534 WP_129395606.1 ankyrin repeat domain-containing protein -
  C2E19_RS25605 (C2E19_25650) katB 5577958..5579499 (-) 1542 WP_129396179.1 catalase KatB -
  C2E19_RS25610 (C2E19_25655) mscL 5579786..5580199 (+) 414 WP_129395607.1 large-conductance mechanosensitive channel protein MscL -
  C2E19_RS25615 (C2E19_25660) - 5580245..5581021 (-) 777 WP_129395608.1 ferredoxin--NADP reductase -
  C2E19_RS25620 (C2E19_25665) - 5581347..5582060 (+) 714 WP_129395609.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48819.28 Da        Isoelectric Point: 6.8987

>NTDB_id=275806 C2E19_RS25595 WP_129395605.1 5575950..5577317(-) (radA) [Pseudomonas sp. DTU12.3]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWSGQQAQIKTLAEVSIEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=275806 C2E19_RS25595 WP_129395605.1 5575950..5577317(-) (radA) [Pseudomonas sp. DTU12.3]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCAACGTTTCCCAAGTGGGCCGGCCAGTGTGGTGAATG
TGGCGCCTGGAACACCCTGACCGAAACCATGATCGAAAGCGGCGGCGCTACAGCCCCGACCGGTCGTACCGGCTGGTCCG
GGCAGCAGGCACAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAAATTCCGCGCTTTTCCACCGCTTCCAGTGAACTG
GATCGCGTGCTCGGCGGCGGTCTGGTCGACGGTTCGGTGGTGTTGATCGGCGGCGATCCAGGTATCGGCAAGTCGACAAT
CCTGCTGCAAACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCGCAGCAACAAGTGG
CCATGCGCGCCCGCCGTCTCGGCTTGCCGCAGGATCAACTGCGAGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGGCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCGCC
CGGCGGCGTCTCTCAGGTGCGTGAAAGCGCGGCGCTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATTTTCCTCG
TCGGTCATGTGACCAAGGAAGGCGCGCTCGCCGGTCCCCGGGTGCTCGAACACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGGCGTCTGCGTTTGCTGCGCGCGGTGAAAAACCGTTTCGGCGCGGTCAACGAGTTGGGTGTGTTTGG
CATGACCGACAAGGGCCTGAAGGAAGTCTCCAACCCTTCGGCGATTTTCCTCACCCGCGCGCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCAACCTGGGAAGGTACGCGGCCGATGCTGGTCGAAGTGCAGGCGCTGGTCGATGACAGCCATTTGGCC
AATCCACGTCGGGTCACTCTGGGCCTGGATCAGAACCGCTTGGCGATGTTGCTCGCGGTGTTGCATCGCCATGGCGGGAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGTGGGGTGAAGGTGCTGGAAACGGCATCTGACCTGGCGCTGA
TGGCCGCCGTCATGTCGAGCTTGCGCAACCGGCCATTGCCGCATGACCTGCTGGTGTTTGGCGAGGTCGGTTTGTCTGGC
GAAGTGCGTCCGGTGCCAAGCGGTCAGGAGCGCCTGAAGGAAGCCGCCAAGCACGGCTTCAAACGCGCGATCGTGCCCAA
GGGCAATGCGCCAAAGGAATCGCCGCCAGGCTTGCAGATTATCGCCGTGACCCGCCTCGAACAGGCCCTCGACGCACTCT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A481QZU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464

Multiple sequence alignment