Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C6H88_RS02945 Genome accession   NZ_CP027214
Coordinates   681417..682784 (+) Length   455 a.a.
NCBI ID   WP_010230867.1    Uniprot ID   Q9PK96
Organism   Chlamydia muridarum str. Nigg isolate CM004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 676417..687784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H88_RS02920 (C6H88_02920) accD 676430..677411 (-) 982 Protein_537 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  C6H88_RS02925 (C6H88_02925) - 677485..678102 (-) 618 WP_010230850.1 superoxide dismutase -
  C6H88_RS02930 (C6H88_02930) - 678232..680013 (-) 1782 WP_010230856.1 phospho-sugar mutase -
  C6H88_RS02935 (C6H88_02935) - 680161..680628 (-) 468 WP_010230859.1 DUF5070 domain-containing protein -
  C6H88_RS02940 (C6H88_02940) rnc 680738..681436 (+) 699 WP_010230864.1 ribonuclease III -
  C6H88_RS02945 (C6H88_02945) radA 681417..682784 (+) 1368 WP_010230867.1 DNA repair protein RadA Machinery gene
  C6H88_RS02950 (C6H88_02950) - 682762..683490 (+) 729 WP_010230871.1 hydroxymethylbilane synthase -
  C6H88_RS04790 - 683652..683795 (-) 144 WP_155102807.1 hypothetical protein -
  C6H88_RS02955 (C6H88_02955) - 684135..684473 (+) 339 WP_010230878.1 hypothetical protein -
  C6H88_RS02960 (C6H88_02960) pknD 684589..687393 (-) 2805 WP_010230882.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49951.47 Da        Isoelectric Point: 7.7117

>NTDB_id=275766 C6H88_RS02945 WP_010230867.1 681417..682784(+) (radA) [Chlamydia muridarum str. Nigg isolate CM004]
MTTTKIKTQWACSECGSYSPKWLGQCPGCFQWNTLVEEIHSSKLKTSSYPLSSTTPVPLNTVKFQEEIRISTRSKGWNRL
LGGGTVCGSLTLLGGEPGIGKSTLLLQISSQFAEQGYKVLYVCGEESVSQTSLRAQRLQISSSNIFLFPETNLEDIKQQI
SDLAPDILIIDSIQIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGN
AHTNYRMIRSVKNRFGPTNELLILSMQTDGLHEVENPSGFFLQEKVVETTGSTIIPIVEGSETLLVEVQALVSSSPFSNP
VRKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEI
RHVTHIEHRIKESIIMGFKGIVMPSGQIKGLPKEYLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=275766 C6H88_RS02945 WP_010230867.1 681417..682784(+) (radA) [Chlamydia muridarum str. Nigg isolate CM004]
ATGACGACAACAAAAATTAAAACACAATGGGCATGTTCAGAATGCGGCTCCTATTCTCCAAAATGGTTAGGACAATGCCC
TGGATGCTTTCAATGGAATACTTTAGTTGAAGAAATACATTCTTCTAAACTGAAAACCTCTTCTTATCCTCTCAGCTCTA
CAACTCCAGTTCCTCTTAACACTGTAAAATTTCAAGAAGAGATAAGAATTTCCACTCGTTCCAAAGGATGGAATCGCCTT
CTTGGAGGGGGAACTGTATGTGGTAGTCTTACTTTACTAGGAGGAGAACCTGGAATAGGAAAATCCACCTTATTACTTCA
GATCTCTTCGCAATTTGCTGAGCAAGGCTATAAAGTATTGTATGTTTGTGGAGAAGAGTCTGTATCCCAAACTTCATTAC
GAGCACAACGCCTACAAATCTCTAGCAGCAATATTTTTCTATTTCCAGAAACAAACCTTGAAGATATCAAGCAACAGATC
TCCGATCTTGCTCCTGATATCCTAATCATTGATTCTATTCAGATTATTTTTTCCCCATCACTAAGCTCTGCTCCAGGATC
AGTTGCTCAAGTTCGAGAAACTACAGCAGAACTCATGCATATTGCAAAACAAAAACAAATTACGACTTTTATTATTGGGC
ATGTTACTAAATCAGGGGAAATCGCAGGACCACGTATTCTTGAACATTTAGTAGATACCGTCCTTTATTTTGAAGGCAAT
GCGCACACCAATTATCGCATGATCCGCTCTGTCAAAAATCGTTTTGGCCCAACAAATGAGTTATTAATTTTATCTATGCA
AACGGATGGGCTGCATGAAGTGGAAAATCCTTCAGGGTTCTTTTTACAAGAAAAAGTTGTGGAAACAACAGGCTCGACAA
TTATCCCTATTGTAGAAGGATCTGAAACGCTTCTTGTAGAAGTGCAAGCTCTAGTTTCTTCTTCTCCTTTCTCTAATCCA
GTACGGAAAACTTCAGGATTTGATCCTAATCGGTTTTCTTTACTCTTAGCTGTTTTAGAAAAAAGAGCGAATGTCAAGTT
ATACACGTCTGATGTCTTTCTTTCGATAGCCGGTGGTTTAAAAATTACCCAACCTTCTGCAGATTTGGGAGCGGTTCTAT
CAGTTGTCTCCTCTCTATATAATCGCTACCTACCCAAGAATTATACCTACACTGGGGAAATTGGACTGGGCGGGGAGATT
CGTCACGTCACACATATAGAGCATCGCATAAAAGAGAGCATTATCATGGGATTTAAGGGTATCGTCATGCCCTCTGGGCA
AATAAAAGGCTTACCTAAAGAATATTTGGATCAAATTGATATTATTGGAGTAAAAACAATTAAAGATGCTGTCCGCCTAC
TACAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-219)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(363-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PK96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.246

100

0.484
  radA Streptococcus pneumoniae Rx1

48.451

99.341

0.481
  radA Streptococcus pneumoniae D39

48.451

99.341

0.481
  radA Streptococcus pneumoniae R6

48.451

99.341

0.481
  radA Streptococcus pneumoniae TIGR4

48.451

99.341

0.481
  radA Streptococcus mitis NCTC 12261

48.23

99.341

0.479
  radA Streptococcus mitis SK321

47.778

98.901

0.473

Multiple sequence alignment