Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   TFGA2_RS12395 Genome accession   NZ_CP032398
Coordinates   2111569..2111712 (-) Length   47 a.a.
NCBI ID   WP_003691943.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TFG-A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2106569..2116712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TFGA2_RS12375 (TFGA2_02176) pilA 2107814..2109067 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  TFGA2_RS12380 (TFGA2_02177) - 2109331..2110143 (-) 813 WP_134797873.1 opacity family porin -
  TFGA2_RS12390 (TFGA2_02178) pilE 2110700..2111200 (-) 501 WP_134797874.1 pilin Machinery gene
  TFGA2_RS12395 pilE 2111569..2111712 (-) 144 WP_003691943.1 hypothetical protein Machinery gene
  TFGA2_RS14130 - 2112015..2112118 (-) 104 Protein_2137 pilin -
  TFGA2_RS12410 (TFGA2_02179) pilE 2112256..2112687 (-) 432 WP_050170900.1 pilin Machinery gene
  TFGA2_RS12415 (TFGA2_02180) lpxC 2112794..2113717 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  TFGA2_RS12420 (TFGA2_02181) - 2114078..2114308 (-) 231 Protein_2140 hypothetical protein -
  TFGA2_RS12425 (TFGA2_02182) - 2114305..2115048 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  TFGA2_RS12430 (TFGA2_02183) gmhB 2115078..2115641 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5034.54 Da        Isoelectric Point: 7.2428

>NTDB_id=275696 TFGA2_RS12395 WP_003691943.1 2111569..2111712(-) (pilE) [Neisseria gonorrhoeae strain TFG-A2]
MTGFNDAAGNDKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=275696 TFGA2_RS12395 WP_003691943.1 2111569..2111712(-) (pilE) [Neisseria gonorrhoeae strain TFG-A2]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447