Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C5Z26_RS10200 Genome accession   NZ_CP027194
Coordinates   2107308..2108684 (+) Length   458 a.a.
NCBI ID   WP_105449845.1    Uniprot ID   A0A2R3JXV4
Organism   Lactobacillus sp. CBA3606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2102308..2113684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Z26_RS10175 (C5Z26_10175) - 2102630..2103970 (+) 1341 WP_105449840.1 NAD(P)/FAD-dependent oxidoreductase -
  C5Z26_RS10180 (C5Z26_10180) - 2104097..2105428 (-) 1332 WP_105449841.1 aminopeptidase C -
  C5Z26_RS10185 (C5Z26_10185) rpiA 2105505..2106188 (-) 684 WP_105449842.1 ribose-5-phosphate isomerase RpiA -
  C5Z26_RS10190 (C5Z26_10190) - 2106237..2106518 (-) 282 WP_105449843.1 GNAT family N-acetyltransferase -
  C5Z26_RS10195 (C5Z26_10195) - 2106657..2107193 (+) 537 WP_105449844.1 dUTP diphosphatase -
  C5Z26_RS10200 (C5Z26_10200) radA 2107308..2108684 (+) 1377 WP_105449845.1 DNA repair protein RadA Machinery gene
  C5Z26_RS10205 (C5Z26_10205) - 2108705..2109889 (+) 1185 WP_199774966.1 PIN/TRAM domain-containing protein -
  C5Z26_RS10210 (C5Z26_10210) gltX 2110054..2111544 (+) 1491 WP_105450175.1 glutamate--tRNA ligase -
  C5Z26_RS10215 (C5Z26_10215) cysS 2111852..2113264 (+) 1413 WP_105449846.1 cysteine--tRNA ligase -
  C5Z26_RS10220 (C5Z26_10220) - 2113266..2113676 (+) 411 WP_105449847.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49951.41 Da        Isoelectric Point: 8.3148

>NTDB_id=275687 C5Z26_RS10200 WP_105449845.1 2107308..2108684(+) (radA) [Lactobacillus sp. CBA3606]
MAKVKTQFVCSNCGYSTPRYLGRCPNCGEWNTLVEEHVDKQPDRKSRVSFAGKTAKPQRLKEVSLTKTPRVKTKLNEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLADTGGSVLYVTGEESASQVKMRADRLKVESEDFYLYPETDMANIRAT
IEATNPQYVIIDSVQTMQEPDVQSAIGSVAQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMRTAGLFEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALVTPTVFGN
AKRTASGLDHNRVSLIMAVLEKRASLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGE
IRRVNRIEQRVGEATKLGFKRIFIPKNNLQGWDIPKGIDVIGVATLKEALQLALQQPN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=275687 C5Z26_RS10200 WP_105449845.1 2107308..2108684(+) (radA) [Lactobacillus sp. CBA3606]
GTGGCAAAAGTTAAAACACAGTTTGTTTGTTCCAATTGTGGGTATTCCACGCCGCGGTATTTGGGGCGTTGCCCCAACTG
TGGCGAATGGAACACGTTAGTTGAAGAACATGTTGATAAGCAACCTGATCGTAAGTCACGTGTGAGTTTTGCTGGAAAAA
CAGCTAAACCGCAACGACTAAAGGAAGTTTCACTGACTAAGACCCCCCGAGTTAAGACCAAGTTAAATGAGTTTAACCGG
GTCTTAGGTGGCGGGGTAGTTCCTGGCTCACTCGTCTTAATCGGGGGTGATCCGGGGATTGGTAAATCCACCTTGCTGTT
ACAAGTTTCAGGTCAGCTTGCCGATACTGGTGGCTCAGTGCTTTACGTTACGGGTGAAGAAAGTGCCTCACAAGTCAAGA
TGCGTGCGGATCGGTTAAAGGTTGAAAGCGAAGACTTTTACCTCTATCCCGAAACGGATATGGCTAATATTCGGGCGACT
ATTGAAGCAACTAATCCGCAATATGTCATCATTGATTCCGTTCAGACCATGCAAGAACCTGATGTGCAATCAGCGATTGG
GTCGGTTGCGCAGATTCGTGAAATCACGGCTGAATTACTACAAATTGCGAAGACCAACGGCATTACTATTTTTATCGTTG
GGCACGTGACTAAAGGTGGCGCCATTGCTGGGCCGAAGATTCTGGAACATATGGTGGATACCGTCTTGTACTTTGAAGGG
GACTTACACCATACGTACCGGATTTTAAGGGCCGTTAAGAATCGGTTTGGGTCAACGAATGAGCTGGGGATTTTTGAGAT
GCGGACAGCGGGGTTATTTGAAGTCGCCAATCCTTCTGAAATCTTCTTAGAAGAACGCTTAAAGGATGCGACGGGTTCGG
CAATTGTTGTTTCGATGGAAGGGACTCGGCCCATCTTGGTGGAAGTGCAAGCGTTAGTGACACCAACGGTTTTTGGTAAT
GCCAAGCGGACGGCCAGTGGGTTAGATCATAATCGTGTTTCGTTGATTATGGCGGTCCTCGAAAAACGAGCGAGTTTGAT
GTTACAAAATCAAGATGCTTACCTCAAGGCGGCTGGTGGCGTAAAATTAGATGAACCAGCGATTGACTTAGCGATTGCCG
TGAGCGTCGCTTCCAGTTATCGCGATCAGCAAACCCGTCCAAGTGATTGTTTTGTGGGTGAAGTGGGGCTAACTGGGGAA
ATTCGCCGGGTTAATCGGATTGAACAACGGGTTGGTGAAGCCACCAAGTTAGGGTTCAAACGAATCTTTATTCCGAAGAA
TAATCTGCAAGGCTGGGATATTCCTAAAGGAATTGATGTGATTGGCGTTGCCACACTAAAAGAAGCGTTACAATTAGCAT
TACAACAGCCAAATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3JXV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

68.071

98.472

0.67
  radA Streptococcus pneumoniae D39

68.071

98.472

0.67
  radA Streptococcus pneumoniae R6

68.071

98.472

0.67
  radA Streptococcus pneumoniae TIGR4

68.071

98.472

0.67
  radA Streptococcus mitis NCTC 12261

67.849

98.472

0.668
  radA Streptococcus mitis SK321

67.849

98.472

0.668
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

99.563

0.653

Multiple sequence alignment