Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C5Z26_RS03715 Genome accession   NZ_CP027194
Coordinates   743501..745309 (-) Length   602 a.a.
NCBI ID   WP_105448677.1    Uniprot ID   A0A2R3JUQ4
Organism   Lactobacillus sp. CBA3606     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 738501..750309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Z26_RS03690 (C5Z26_03690) - 739461..740099 (+) 639 WP_105448672.1 copper homeostasis protein CutC -
  C5Z26_RS03695 (C5Z26_03695) - 740147..741034 (-) 888 WP_105448673.1 RluA family pseudouridine synthase -
  C5Z26_RS03700 (C5Z26_03700) - 741031..741834 (-) 804 WP_105448674.1 NAD kinase -
  C5Z26_RS03705 (C5Z26_03705) - 741838..742497 (-) 660 WP_105448675.1 GTP pyrophosphokinase family protein -
  C5Z26_RS03710 (C5Z26_03710) - 742796..743428 (+) 633 WP_105448676.1 DsbA family protein -
  C5Z26_RS03715 (C5Z26_03715) pepF 743501..745309 (-) 1809 WP_105448677.1 oligoendopeptidase F Regulator
  C5Z26_RS03720 (C5Z26_03720) - 745382..746473 (-) 1092 WP_105448678.1 competence protein CoiA -
  C5Z26_RS03725 (C5Z26_03725) - 746569..747300 (-) 732 WP_105448679.1 adaptor protein MecA -
  C5Z26_RS03730 (C5Z26_03730) spxA 747439..747837 (-) 399 WP_105448680.1 transcriptional regulator SpxA -
  C5Z26_RS03735 (C5Z26_03735) - 748131..748874 (-) 744 WP_105448681.1 MBL fold metallo-hydrolase -
  C5Z26_RS03740 (C5Z26_03740) - 749005..749505 (+) 501 WP_105448682.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67380.60 Da        Isoelectric Point: 5.4041

>NTDB_id=275675 C5Z26_RS03715 WP_105448677.1 743501..745309(-) (pepF) [Lactobacillus sp. CBA3606]
MVATKHLPTRSAVPTQLTWDLTPIYADQAAYDADVKQIQAALPTVSALAEHFTDSATTVLAGVQGILDLYRRLEKVAVYA
SLKSDQDTGNSQNQALDDQAGNLTAQVSAATAWFEPAILTLTPAQLDTYLDENVALRDYRHLLDTVRLQKGHVLSTAEES
LLAGAGDIFAASEKTFGVLNNADFEFPVVNDEQGNPVKLSQGVYGVLLESVKPAVRREAFTALYQVYSQFRRTLATTLAS
QVKVHNFVAQAHHYPDARTAALSANQIPTQVYDTLVTTVDDHLDLLHRYVALRKSILNVDELHMYDLYTPLTGQPELTYT
YEQAQATVLKALKVLGPDYLKAVKTAFNSRWIDVVENQGKRSGAYSSGMYDTAPYILLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYAIFVAEIASTTNENLLTNYLLAHETDPKVRAYVLNYYLDGFKGTLFRQTQFAEFEQWLHEQAAAGQ
ALTADRLSAHYLKLNQRYYGDAVVSDPQIADEWARIPHFYYNYYVYQYATGFAAASTLAQKISTNEPGAVKAYLGYLKAG
SSEFPIDVMRNAGVDMTKSTYLTAAFTVFEQRLTEFEQLIKH

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=275675 C5Z26_RS03715 WP_105448677.1 743501..745309(-) (pepF) [Lactobacillus sp. CBA3606]
ATGGTAGCAACCAAGCACCTACCAACGCGGTCAGCCGTCCCGACGCAACTGACCTGGGATTTAACGCCTATTTATGCAGA
CCAAGCCGCTTATGATGCGGATGTTAAACAAATTCAAGCGGCTTTGCCGACGGTTTCAGCCTTAGCTGAACATTTTACAG
ATTCAGCAACAACCGTCTTAGCAGGGGTTCAAGGTATTTTAGACTTGTATCGGCGCTTAGAAAAGGTCGCCGTTTATGCA
AGCTTAAAGAGTGATCAAGATACTGGTAATAGTCAAAATCAAGCATTAGATGATCAAGCAGGGAACTTAACGGCTCAAGT
TTCAGCAGCGACTGCTTGGTTTGAACCTGCCATTTTGACGTTGACGCCAGCACAATTAGACACGTATTTGGATGAGAACG
TCGCCTTGCGTGATTATCGCCACTTATTAGATACCGTGCGGTTACAAAAAGGGCATGTCTTATCCACCGCTGAAGAATCA
CTTTTAGCGGGGGCCGGTGATATCTTTGCGGCTTCTGAAAAAACTTTTGGCGTTTTGAATAATGCGGATTTTGAATTTCC
GGTTGTTAATGATGAGCAAGGCAATCCCGTTAAGTTATCACAGGGGGTTTATGGTGTTTTGCTGGAATCGGTTAAACCGG
CTGTTCGTCGCGAAGCCTTTACGGCATTATATCAAGTTTATTCTCAATTTCGGCGGACGTTGGCCACTACTTTGGCTAGT
CAAGTGAAAGTGCATAATTTTGTGGCCCAAGCGCATCACTATCCGGATGCACGGACCGCAGCTTTAAGTGCAAATCAGAT
TCCAACCCAGGTTTATGACACGTTGGTCACGACGGTTGATGATCACTTAGACTTACTCCATCGCTATGTTGCTCTCCGAA
AATCAATCCTTAATGTTGACGAGTTGCATATGTATGACTTATATACGCCGTTAACGGGACAACCAGAATTGACGTATACG
TATGAGCAGGCTCAAGCGACTGTCTTAAAGGCATTAAAAGTTCTGGGACCTGATTACTTAAAAGCGGTTAAAACGGCCTT
TAATTCGCGCTGGATTGACGTTGTGGAGAATCAGGGTAAACGAAGTGGGGCCTATTCGTCAGGGATGTATGATACGGCGC
CATATATTTTATTGAATTGGCAAGACAACATCGATAATTTATATACGTTGGTCCATGAAATGGGTCATAGTATGCATTCA
TACTTTACGACCCACCACCAACCCTATCAGTATGGCGATTATGCCATCTTCGTGGCTGAAATTGCTTCCACGACGAATGA
AAACTTGCTGACCAATTATTTGTTAGCGCATGAGACTGATCCTAAAGTTCGGGCTTACGTGCTTAATTATTATTTGGATG
GTTTTAAGGGGACCTTGTTCCGCCAAACACAATTCGCTGAATTTGAGCAGTGGTTACATGAACAAGCAGCTGCCGGTCAA
GCCTTAACAGCTGACCGACTTTCAGCGCATTATCTGAAGCTCAATCAACGCTATTATGGCGATGCAGTGGTTAGTGATCC
TCAAATTGCGGATGAGTGGGCACGAATTCCACATTTCTATTACAATTATTATGTTTATCAATATGCGACTGGTTTTGCCG
CAGCTTCAACGTTGGCTCAAAAGATTTCTACCAATGAACCAGGCGCGGTTAAGGCGTATCTGGGGTATTTGAAGGCTGGT
TCCTCCGAGTTTCCAATTGATGTGATGCGCAATGCGGGCGTGGATATGACAAAATCGACGTATTTAACCGCCGCCTTTAC
TGTTTTTGAACAACGATTAACTGAATTTGAACAACTCATTAAGCATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(118-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3JUQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.52

98.339

0.507

Multiple sequence alignment