Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C5Z25_RS08950 Genome accession   NZ_CP027190
Coordinates   1868395..1869771 (+) Length   458 a.a.
NCBI ID   WP_105452310.1    Uniprot ID   -
Organism   Lactobacillus sp. CBA3605     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1863395..1874771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Z25_RS08925 (C5Z25_08925) - 1863697..1865037 (+) 1341 WP_105452306.1 NAD(P)/FAD-dependent oxidoreductase -
  C5Z25_RS08930 (C5Z25_08930) - 1865184..1866515 (-) 1332 WP_105452307.1 aminopeptidase C -
  C5Z25_RS08935 (C5Z25_08935) rpiA 1866592..1867275 (-) 684 WP_105452308.1 ribose-5-phosphate isomerase RpiA -
  C5Z25_RS08940 (C5Z25_08940) - 1867324..1867605 (-) 282 WP_105449843.1 GNAT family N-acetyltransferase -
  C5Z25_RS08945 (C5Z25_08945) - 1867744..1868280 (+) 537 WP_105452309.1 dUTP diphosphatase -
  C5Z25_RS08950 (C5Z25_08950) radA 1868395..1869771 (+) 1377 WP_105452310.1 DNA repair protein RadA Machinery gene
  C5Z25_RS08955 (C5Z25_08955) - 1869792..1870973 (+) 1182 WP_105452311.1 PIN/TRAM domain-containing protein -
  C5Z25_RS08960 (C5Z25_08960) gltX 1871137..1872627 (+) 1491 WP_105452876.1 glutamate--tRNA ligase -
  C5Z25_RS08965 (C5Z25_08965) cysS 1872929..1874341 (+) 1413 WP_105452312.1 cysteine--tRNA ligase -
  C5Z25_RS08970 (C5Z25_08970) - 1874343..1874753 (+) 411 WP_105452313.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50009.44 Da        Isoelectric Point: 8.0326

>NTDB_id=275655 C5Z25_RS08950 WP_105452310.1 1868395..1869771(+) (radA) [Lactobacillus sp. CBA3605]
MAKVKTQFVCSNCGYSTPRYLGRCPNCGEWNTLVEEHVDKQPDRKSRVSFAGKTAKPQRLKEVSLTKTPRVKTKLNEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLADTGGSVLYVTGEESASQVKMRADRLKVESEDFYLYPETDMANIRAT
IEATNPQYVIIDSVQTMQEPDVQSAIGSVAQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMRTGGLFEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALVTPTVFGN
AKRTASGLDHNRVSLIMAVLEKRASLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGE
IRRVNRIEQRVGEATKLGFKRIFIPKNNLQGWDIPKEIDVIGVATLKEALQLALQQPN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=275655 C5Z25_RS08950 WP_105452310.1 1868395..1869771(+) (radA) [Lactobacillus sp. CBA3605]
GTGGCAAAAGTTAAAACACAGTTTGTTTGTTCCAATTGTGGGTATTCCACACCACGGTATCTGGGGCGTTGCCCTAACTG
TGGCGAATGGAACACGTTAGTTGAAGAACATGTTGATAAGCAACCTGATCGTAAGTCACGTGTGAGCTTTGCTGGAAAGA
CAGCAAAACCCCAACGACTAAAGGAAGTTTCACTGACTAAAACCCCTCGGGTTAAGACCAAGTTAAATGAGTTTAACCGG
GTCTTAGGTGGCGGGGTTGTGCCCGGTTCGCTGGTCTTAATTGGTGGCGATCCTGGGATTGGTAAATCCACCTTGCTGTT
ACAAGTTTCAGGCCAACTTGCTGACACTGGTGGCTCAGTGCTCTACGTGACTGGTGAAGAAAGTGCTTCGCAAGTGAAGA
TGCGCGCGGACCGGTTAAAGGTTGAAAGCGAAGATTTTTACTTGTATCCAGAGACGGATATGGCAAATATTCGGGCGACT
ATTGAAGCAACTAATCCGCAATACGTCATTATTGATTCTGTTCAGACCATGCAAGAGCCTGATGTGCAATCGGCGATTGG
GTCGGTTGCGCAAATTCGTGAAATTACCGCTGAGTTATTGCAAATTGCGAAGACCAACGGCATTACTATTTTTATCGTTG
GGCACGTGACTAAGGGTGGGGCCATTGCTGGACCGAAAATTTTGGAACATATGGTGGATACCGTCTTATACTTTGAAGGC
GACTTACATCATACGTACCGGATTTTAAGAGCCGTTAAGAATCGGTTCGGGTCAACGAATGAACTGGGGATTTTTGAGAT
GCGAACGGGCGGGTTATTTGAAGTCGCCAATCCGTCTGAAATCTTCTTAGAAGAACGTTTAAAGGATGCGACGGGTTCGG
CAATTGTCGTTTCAATGGAAGGCACCCGACCTATCTTGGTGGAGGTGCAAGCGTTAGTGACGCCAACCGTCTTTGGTAAT
GCCAAACGGACAGCTAGTGGGTTGGATCATAATCGTGTTTCGTTGATTATGGCAGTCCTTGAAAAGCGGGCGAGCTTGAT
GTTACAAAATCAAGATGCTTACCTAAAGGCAGCCGGTGGCGTAAAATTAGATGAACCAGCGATTGATTTAGCGATTGCCG
TGAGTGTGGCTTCCAGTTATCGAGATCAACAAACACGCCCTAGTGATTGTTTCGTGGGTGAAGTTGGGCTAACAGGTGAA
ATTCGACGGGTCAATCGGATTGAACAGCGGGTTGGTGAAGCTACAAAATTAGGATTCAAGCGAATCTTTATTCCAAAGAA
TAATCTGCAAGGCTGGGATATTCCTAAAGAAATTGATGTGATTGGAGTTGCCACGTTAAAAGAAGCACTACAATTAGCAT
TACAACAGCCAAATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

68.514

98.472

0.675
  radA Streptococcus pneumoniae D39

68.514

98.472

0.675
  radA Streptococcus pneumoniae R6

68.514

98.472

0.675
  radA Streptococcus pneumoniae TIGR4

68.514

98.472

0.675
  radA Streptococcus mitis NCTC 12261

68.293

98.472

0.672
  radA Streptococcus mitis SK321

68.293

98.472

0.672
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

99.563

0.651

Multiple sequence alignment